New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4813168 =	1 (0.070)	18 (1.530)	5/192	NT	45.1%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5993784 =	43 (3.660)					intergenic (+73/‑473)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

CGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTC  >  NC_002947/4813054‑4813301                                                                                                                   |                                                                                                                                      ggggTAGGTGTTTGGCGGTAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCTAGCGCCGCCCGCGCGGCGCTTCgcgggta                                                                                                                  <  1:323137/135‑3 (MQ=37)                                                                                cgggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc                                   >  1:116078‑M1/36‑136 (MQ=255)                                                                                ataattggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAgg                                                                                                 <  2:38518‑M1/39‑1 (MQ=255)                                                                                ataattggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAgg                                                                                                 >  2:323313‑M1/36‑74 (MQ=255)                                                                                ataattggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAgg                                                                                                 <  1:242345‑M1/39‑1 (MQ=255)                                                                                ataattggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAgg                                                                                                 <  2:317100‑M1/39‑1 (MQ=255)                                                                                ataattggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAgg                                                                                                 >  1:317100‑M1/36‑74 (MQ=255)                                                                                ataattggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAgg                                                                                                 <  1:323313‑M1/39‑1 (MQ=255)                                                                                ataattggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAgg                                                                                                 >  1:38518‑M1/36‑74 (MQ=255)                                                                                ataattggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAgg                                                                                                 >  2:242345‑M1/36‑74 (MQ=255)                                                                                ataattggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACCCCTCAAAATTCCAACGCCGTCCACTCACAATTCCAAcgc                                   <  2:108821‑M1/101‑1 (MQ=255)                                                                                ataactggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGatctcc                                                                                                     <  2:267427‑M1/35‑2 (MQ=255)                                                                                ataactggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGatctcc                                                                                                     >  1:267427‑M1/36‑69 (MQ=255)                                                                                agggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc                                   >  1:372720‑M1/36‑136 (MQ=255)                                                                                  aactggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCcgcgcg                                                                                                                      >  1:401172‑M1/34‑51 (MQ=255)                                                                                  aactggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCcgcgcg                                                                                                                      <  2:401172‑M1/18‑1 (MQ=255)                                                                                  aactggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCcgcgcg                                                                                                                      <  2:158326‑M1/18‑1 (MQ=255)                                                                                  aactggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCcgcgcg                                                                                                                      >  1:158326‑M1/34‑51 (MQ=255)                                                                                  aactggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcgg                                                                                                                     <  2:162732‑M1/19‑1 (MQ=255)                                                                                  aactggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcgg                                                                                                                     >  1:162732‑M1/34‑52 (MQ=255)                                                                                            aaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACAcctccca                                                                   >  2:233820‑M1/24‑89 (MQ=255)                                                                                            aaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACAcctccca                                                                   <  1:233820‑M1/69‑4 (MQ=255)                                                                                            aaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAg                                                                                                  <  2:249584‑M1/38‑1 (MQ=255)                                                                                            aaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAg                                                                                                  >  1:249584‑M1/24‑61 (MQ=255)                                                                                                       ggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcgcc            >  1:77421‑M1/13‑136 (MQ=255)                                                                                                                 taCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTc  <  1:257992‑M1/134‑1 (MQ=255)                                                                                                                   |                                                                                                                                      CGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTC  >  NC_002947/4813054‑4813301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.