New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 746963	NA (NA)	9 (0.610)	8/242	NT	90.1%	intergenic (‑87/‑707)	PP_0638/PP_5448	transposase/hypothetical protein
	?	NC_002947	= 1015822	1 (0.070)					intergenic (‑49/‑719)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3

CTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACG  >  NC_002947/1015733‑1015954                                                                                          |                                                                                                                                     cTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccc                                                                                        <  1:422369‑M2/136‑47 (MQ=255)      aaTGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgct                                                                                   <  1:361277‑M2/136‑52 (MQ=255)                         gTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttct                                                                <  2:287004‑M2/136‑71 (MQ=255)                         gTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttct                                                                >  2:74112‑M2/1‑66 (MQ=255)                             ccAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggag                                                            >  1:123899‑M2/1‑62 (MQ=255)                                                                     aaaTAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaa                    >  1:287004‑M2/1‑22 (MQ=255)                                                                     aaaTAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaa                    >  1:343174‑M2/1‑22 (MQ=255)                                                                           acaTAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctac              >  1:49663‑M2/2‑16 (MQ=255)                                                                                   tAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctaccgatttctttctggagccagcccgccatgattcgccccgacagcaaagtcgaaaaagtctacctctaccc      <  2:16609‑M2/136‑129 (MQ=255)                                                                                     aCAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGa    >  2:212694/1‑136 (MQ=255)                                                                                       aaaGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgcccagacagcaaagtcgaaaaagtctacctctaccccaag  <  1:38031‑M2/136‑133 (MQ=255)                                                                                          |                                                                                                                                     CTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACG  >  NC_002947/1015733‑1015954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.