| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 24,716 | G→T | 28.6% | E8* (GAG→TAG) | PP_0020 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 24,716 | 0 | G | T | 28.6% | 21.5 / 5.4 | 14 | E8* (GAG→TAG) | PP_0020 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (7/3); new base T (2/2); total (9/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.80e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.98e-01 | |||||||||||
TGCGGAGTTGGCTGGCAAGGCGCAGCAGCTACGTGATAGGGACCTCAAAACCATCGCCAGGTTAGAAAAATCGGGCGGTTCGAATTTGGTTTGATTATGGCTGATACACCTGAGCAAGAGATCGTAAGTGCCATTAGCGCTGCTGGTTGGCTGCAAGGAGATACCGTCTCAGGTGACGCCTTGATTGAACACATATCCGAGGAGGTCCTGAAAGGCCAATTCGAGGGGGTGGCTCCAGCTTA > NC_002947/24605‑24846 | tGCGGAGTTGGCTGGCAAGGCGCAGCAGCTACGTGATAGGGACCTCAAAACCATCGCCAGGTTAGAAAAATCGGGCGGTTCGAATTTGGTTTGATTATGGCTGATACACCTGAGCAAGAGATCGTAAGTGCCATTa > 1:113542/1‑136 (MQ=255)tGCGGAGTTGGCTGGCAAGGCGCAGCAGCTACGTGATAGGGACCTCAAAACCATCGCCAGGTTAGAAAAATCGGGCGGTTCGAATTTGGTTTGATTATGGCTGATACACCTGAGCAAGAGATCGTAAGTGCCATTa > 1:348562/1‑136 (MQ=255)tGCGGAGTTGGCTGGCAAGGCGCAGCAGCTACGTGATAGGGACCTCAAAACCATCGCCAGGTTAGAAAAATCGGGCGGTTCGAATTTGGTTTGATTATGGCTGATACACCTGAGCAAGAGATCGTAAGTGCCATTa > 1:351486/1‑136 (MQ=255)tGCGGAGTTGGCTGGCAAGGCGCAGCAGCTACGTGATAGGGACCTCAAAACCATCGCCAGGTTAGAAAAATCGGGCGGTTCGAATTTGGTTTGATTATGGCTGATACACCTGAGCAAGAGATCGTAAGTGCCATTa > 1:399413/1‑136 (MQ=255) ttGGCTGGCAAGGCGCAGCAGCTACGTGATAGGGACCTCAAAACCATCGCCAGGTTAGAAAAATCGGGCGGTTCGAATTTGGTTTGATTATGGCTGATACACCTGAGCAAGAGATCGTAAGTGCCATTAGCgctgc > 1:386491/1‑136 (MQ=255) ccTCAAAACCATCGCCAGGTTAGAAAAATCGGGCGGTTCGAATTTGGTTTGATTATGGCTGATACACCTGAGCAAGAGATCGTAAGTGCCATTAGCGCTGCTGGTTGGCTGCAAGGAGATACCGTCTCAGGTGACg < 2:305102/136‑1 (MQ=255) tCAAAACCATCGCCAGGTTAGAAAAATCGGGCGGTTCGAATTTGGTTTGATTATGGCTGATACACCTGAGCAAGAGATCGTAAGTGCCATTAGCGCTGCTGGTTGGCTGCAAGGAGATACCGTCTCAGGTGACGcc > 2:363514/1‑136 (MQ=255) aaCCATCGCCAGGTTAGAAAAATCGGGCGGTTCGAATTTGGTTTGATTATGGCTGATACACCTGAGCAAGAGATCGTAAGTGCCATTAGCGCTGCTGGTTGGCTGCAAGGAGATACCGTCTCAGGTGACGCCttga < 1:172076/136‑1 (MQ=255) ccAGGTTAGAAAAATCGGGCGGTTCGAATTTGGTTTGATTATGGCTGATACACCTTAGCAAGAGATCGTAAGTGCCATTAGCGCTGCTGGTTGGCTGCAAGGAGATACCGTCTCAGGTGACGCCTTGATTGAacac > 2:15010/1‑136 (MQ=255) ccAGGTTAGAAAAATCGGGCGGTTCGAATTTGGTTTGATTATGGCTGATACACCTTAGCAAGAGATCGTAAGTGCCATTAGCGCTGCTGGTTGGCTGCAAGGAGATACCGTCTCAGGTGACGCCTTGATTGAacac > 2:80786/1‑136 (MQ=255) aTTTGGTTTGATTATGGCTGATACACCTGAGCAAGAGATCGTAAGTGCCATTAGCGCTGCTGGTTGGCTGCAAGGAGATACCGTCTCAGGTGACGCCTTGATTGAACACATATCCGAGGAGGTCCTGAAAGGCCaa < 2:386491/136‑1 (MQ=255) tATGGCTGATACACCTTAGCAAGAGATCGTAAGTGCCATTAGCGCTGCTGGTTGGCTGCAAGGAGATACCGTCTCAGGTGACGCCTTGATTGAACACATATCCGAGGAGGTCCTGAAAGGCCAATTCGAGGGGGTg < 1:15010/136‑1 (MQ=255) tATGGCTGATACACCTTAGCAAGAGATCGTAAGTGCCATTAGCGCTGCTGGTTGGCTGCAAGGAGATACCGTCTCAGGTGACGCCTTGATTGAACACATATCCGAGGAGGTCCTGAAAGGCCAATTCGAGGGGGTg < 1:80786/136‑1 (MQ=255) cacCTGAGCAAGAGATCGTAAGTGCCATTAGCGCTGCTGGTTGGCTGCAAGGAGATACCGTCTCAGGTGACGCCTTGATTGAACACATATCCGAGGAGGTCCTGAAAGGCCAATTCGAGGGGGTGGCTCCAGCTTa > 1:317917/1‑136 (MQ=255) | TGCGGAGTTGGCTGGCAAGGCGCAGCAGCTACGTGATAGGGACCTCAAAACCATCGCCAGGTTAGAAAAATCGGGCGGTTCGAATTTGGTTTGATTATGGCTGATACACCTGAGCAAGAGATCGTAAGTGCCATTAGCGCTGCTGGTTGGCTGCAAGGAGATACCGTCTCAGGTGACGCCTTGATTGAACACATATCCGAGGAGGTCCTGAAAGGCCAATTCGAGGGGGTGGCTCCAGCTTA > NC_002947/24605‑24846 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |