| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,982,697 | C→T | 100% | P457S (CCG→TCG) | PP_1770 → | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,982,697 | 0 | C | T | 100.0% | 23.4 / NA | 9 | P457S (CCG→TCG) | PP_1770 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (2/7); total (2/7) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GGTCAGCCGTTCGATGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCCGGACGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGT > NC_002947/1982577‑1982821 | ggTCTGCCGTTCGATGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCCGGACGGCCGTTCGCCGCTGACCATcc < 2:305609/136‑1 (MQ=255) gcAGCCGTTCGATGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCCGGACGGCCGTTCGCCGCTGACCATCcgc < 2:77043/135‑1 (MQ=255) ttCGATGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCCGGACGGCCGTTCGCCGCTGACCATCCGCGGTGGcc < 1:342881/136‑1 (MQ=255) cATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCCGGACGGCCGTTCGCCGCTGACCATCCGCGGTGGCCACAAGCTCaaa < 1:141529/136‑1 (MQ=255) cATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCCGGACGGCCGTTCGCCGCTGACCATCCGCGGTGGCCACAAGCTCaaa < 2:111576/136‑1 (MQ=255) cATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCCGGACGGCCGTTCGCCGCTGACCATCCGCGGTGGCCACAAGCTCaaa < 2:228230/136‑1 (MQ=255) tGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCCGGACGGCCGTTCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGcc < 2:292680/136‑1 (MQ=255) tgGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGATACCGGCCCGGACGGCCGTTCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATc > 1:273980/1‑136 (MQ=255) cGGACGGCCGTTCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGt > 1:418942/1‑136 (MQ=255) | GGTCAGCCGTTCGATGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCCGGACGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGT > NC_002947/1982577‑1982821 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |