| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,834,812 | G→T | 36.3% | G142C (GGC→TGC) | PP_2482 → | molybdenum cofactor biosynthesis protein A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,834,812 | 0 | G | T | 36.3% | 12.7 / 5.9 | 11 | G142C (GGC→TGC) | PP_2482 | molybdenum cofactor biosynthesis protein A |
| Reads supporting (aligned to +/- strand): ref base G (5/2); new base T (2/2); total (7/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAAC > NC_002947/2834714‑2834947 | gcgcCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCaa < 1:183286/136‑1 (MQ=255) tCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACTGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCaa > 2:369671/1‑136 (MQ=255) tCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACTGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCaa > 2:49866/1‑136 (MQ=255) tCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCaa > 1:211887/1‑136 (MQ=255) tCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCaa > 1:364278/1‑136 (MQ=255) gCTCGACTCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGAt > 1:328931/1‑136 (MQ=255) cGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCaa < 2:145066/136‑1 (MQ=255) aCCCGAGTGCCTTCCGCACGATCGCCAATGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGt > 2:81604/1‑136 (MQ=255) gCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCa > 1:280445/1‑136 (MQ=255) aaGGGCGGCGACCTGCAGACGGTGCTCAACTGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTc < 1:369671/136‑1 (MQ=255) aaGGGCGGCGACCTGCAGACGGTGCTCAACTGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTc < 1:49866/136‑1 (MQ=255) ggCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAAc < 1:81604/136‑1 (MQ=255) ggCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAAc < 2:164598/136‑1 (MQ=255) | GCGCCGGCATCCAGCGGCTCAATGTGTCCCTCGATACGCTCGACCCGAGTGCCTTCCGCACGATCGCCAAGGGCGGCGACCTGCAGACGGTGCTCAACGGCATTGAGCAGGCGCGCCGAGCCGGCATGAGCATCAAGATCAACATGGTGCCGATGCGTGGTAGCAACCTCGATCAAGTTTTGCCCATGTTGGCGTTCTGCCTTCAGCAGGGCTACGAGTTGCGTTTTATCGAAC > NC_002947/2834714‑2834947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |