| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,380,749 | C→T | 24.9% | E605K (GAG→AAG) | dnaK ← | chaperone protein DnaK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,380,749 | 0 | C | T | 24.9% | 24.8 / 4.3 | 16 | E605K (GAG→AAG) | dnaK | chaperone protein DnaK |
| Reads supporting (aligned to +/- strand): ref base C (7/5); new base T (2/2); total (9/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GACAACATGCAGGGATTACTGCTTGTTGTTGTCTTTCACTTCTTCGAACTCGGCGTCAACCACGTCATCGTGCTTGGCTTCCGGCTCGGCCTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTCGGCGTACATCTTCTGGGCAACCGGGGCAGAGACCTTGGACAGCTCTTCAACCTTGGCGTCGATGGCAGCCTTGTCGTCGCCTTTGACAGCGGCTTCCAGGGCAACAACGGCGGCCTCGATGGCG > NC_002947/5380621‑5380873 | gACAACATGCAGGGATTACTGCTTGTTGTTGTCTTTCACTTCTTCGAACTCGGCGTCAACCACGTCATCGTGCTTGGCTTCCGGCTCGGCCTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTCGGCGTAc > 1:380867/1‑136 (MQ=255) tGCTTGTTGTTGTCTTTCACTTCTTCGAACTCGGCGTCAACCACGTCATCGTGCTTGGCTTCCGGCTCGGCCTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTCGGCGTACATCTTCTGGGCAACCgggg < 2:416523/136‑1 (MQ=255) tgttgtCTTTCACTTCTTCGAACTCGGCGTCAACCACGTCATCGTGCTTGGCTTCCGGCTCGGCCTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTCGGCGTACATCTTCTGGGCAACCgggg < 1:93410/129‑1 (MQ=255) tgttgtCTTTCACTTCTTCGAACTCGGCGTCAACCACGTCATCGTGCTTGGCTTCCGGCTCGGCCTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTCGGCGTACATCTTCTGGGCAACCgggg > 2:93410/1‑129 (MQ=255) gttgtCTTTCACTTCTTCGAACTCGGCGTCAACCACGTCATCGTGCTTGGCTTCCGGCTCGGCCTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTCGGCGTACATCTTCTGGGCAACCGGGGCAGAGAcc > 1:276070/1‑136 (MQ=255) gtCTTTCACTTCTTCGAACTCGGCGTCAACCACGTCATCGTGCTTGGCTTCCGGCTCGGCCTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTCGGCGTACATCTTCTGGGCAACCGGGGCAGAGACCTTg < 2:380867/136‑1 (MQ=255) cGAACTCGGCGTCAACCACGTCATCGTGCTTGGCTTCCGGCTCGGCCTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTCGGCGTACATCTTCTGGGCAACCgggg < 1:326744/111‑1 (MQ=255) cGAACTCGGCGTCAACCACGTCATCGTGCTTGGCTTCCGGCTCGGCCTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTCGGCGTACATCTTCTGGGCAACCgggg > 2:326744/1‑111 (MQ=255) cGAACTCGGCGTCAACCACGTCATCGTGCTTGGCTTCCGGCTCGGCCTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTCGGCGTACATCTTCTGGGCAACCGGGGCAGAGACCTTGGACAGCTCTTCAAc > 1:127639/1‑136 (MQ=255) cGAACTCGGCGTCAACCACGTCATCGTGCTTGGCTTCCGGCTCGGCCTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTCGGCGTACATCTTCTGGGCAACCGGGGCAGAGACCTTGGACAGCTCTTCAAc > 1:241569/1‑136 (MQ=255) cGGCTCGGCCTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGAATGCTCGGCGTACATCTTCTGGGCAACCGGGGCAGAGACCTTGGACAGCTCTTCAACCTTGGCGTCGATGGCAGCCTTGTCGTCGCCTTTGACa < 2:401843/136‑1 (MQ=255) ccTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTTGGCGTACATCTTCTGGGCAACCGGGGCAGAGACCTTGGACAGCTCTTCAACCTTGGCGTCGATGGCAGCCTTGTCGTCGCCTTTGACAGCGGCTTc > 1:196337/1‑136 (MQ=255) ccTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTTGGCGTACATCTTCTGGGCAACCGGGGCAGAGACCTTGGACAGCTCTTCAACCTTGGCGTCGATGGCAGCCTTGTCGTCGCCTTTGACAGCGGCTTc > 1:198298/1‑136 (MQ=255) ttCAGCCGACTGCTTGGCGTACATCTTCTGGGCAACCGGGGCAGAGACCTTGGACAGCTCTTCAACCTTGGCGTCGATGGCAGCCTTGTCGTCGCCTTTGACAGCGGCTTCCAGGGCAACAACGGCGGCCTCGATg < 2:196337/136‑1 (MQ=255) ttCAGCCGACTGCTTGGCGTACATCTTCTGGGCAACCGGGGCAGAGACCTTGGACAGCTCTTCAACCTTGGCGTCGATGGCAGCCTTGTCGTCGCCTTTGACAGCGGCTTCCAGGGCAACAACGGCGGCCTCGATg < 2:198298/136‑1 (MQ=255) aGCCGACTGCTCGGCGTACATCTTCTGGGCAACCGGGGCAGAGACCTTGGACAGCTCTTCAACCTTGGCGTCGATGGCAGCCTTGTCGTCGCCTTTGACAGCGGCTTCCAGGGCAACAACGGCGGCCTCGATGGCg > 1:93043/1‑136 (MQ=255) | GACAACATGCAGGGATTACTGCTTGTTGTTGTCTTTCACTTCTTCGAACTCGGCGTCAACCACGTCATCGTGCTTGGCTTCCGGCTCGGCCTGCTGCGCGCCACCCTGAGGCTGTTCAGCCGACTGCTCGGCGTACATCTTCTGGGCAACCGGGGCAGAGACCTTGGACAGCTCTTCAACCTTGGCGTCGATGGCAGCCTTGTCGTCGCCTTTGACAGCGGCTTCCAGGGCAACAACGGCGGCCTCGATGGCG > NC_002947/5380621‑5380873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |