| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 1,515,811 | (33-bp)2→1 | pseudogene (715‑747/1851 nt) | PP_1325 ← | putative lipoprotein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 1515769 | 1515801 | 33 | 11 [0] | [0] 11 | PP_1325 | putative lipoprotein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1515802 = | 0 (0.000) | 10 (1.570) | 9/180 | 0.1 | 100% | pseudogene (756/1851 nt) | PP_1325 | putative lipoprotein |
| ? | NC_002947 | = 1515768 | 0 (0.000) | pseudogene (790/1851 nt) | PP_1325 | putative lipoprotein | |||||
GGCCTTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1515952‑1515802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaccaagctcaaggagctggccagccagccgctgaccaagATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGG < NC_002947/1515768‑1515654 GGCCTTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTCCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGC > 1:153153/1‑136 CGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTG > 2:208038/1‑136 AAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAA < 1:208038/136‑1 CAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTC < 1:104087/136‑1 GGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCG > 2:131446/1‑136 GCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGC < 1:131446/136‑1 CCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCT < 1:236208/136‑1 CAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGC > 1:208377/1‑136 CCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGC < 2:2802/136‑1 CGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCC < 1:36503/136‑1 CCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGTCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGC > 2:239373/1‑136 CAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCC > 1:122261/1‑129 CAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCC < 2:122261/129‑1 GCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGG > 2:166328/1‑136 GGCCTTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1515952‑1515802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaccaagctcaaggagctggccagccagccgctgaccaagATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGG < NC_002947/1515768‑1515654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |