New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 746963	NA (NA)	10 (1.080)	7/262	0.2	91.0%	intergenic (‑87/‑707)	PP_0638/PP_5448	transposase/hypothetical protein
	?	NC_002947	= 1015822	1 (0.110)					intergenic (‑49/‑719)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3

ATCATGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAA  >  NC_002947/1015696‑1015950                                                                                                                               |                                                                                                                                 gccgcacgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGaaaa                                                                                                                         >  1:102918‑M2/118‑136 (MQ=255)      acgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGtgtg                                                                                                                    <  2:168566‑M2/24‑1 (MQ=255)          ctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaacttaggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACAt                                                                                                                >  1:9365‑M2/109‑136 (MQ=255)                                gTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctga                                                                                          <  2:180302‑M2/136‑41 (MQ=255)                                       tgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACaa                                                                                   >  1:138562‑M2/80‑136 (MQ=255)                                                    gCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccg                                                                      <  2:207055‑M2/136‑61 (MQ=255)                                                                        aactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGa                                                  <  2:9957‑M2/90‑1 (MQ=255)                                                                        aactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGa                                                  <  2:190994‑M2/90‑1 (MQ=255)                                                                                                   tGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgatccccgatgctgtgctcccgatttctttctggagctcgccgaccatgatgcgacccgacgccaaagt                       >  1:107077‑M2/1‑29 (MQ=255)                                                                                                     gTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcg                     <  1:157662‑M2/136‑110 (MQ=255)                                                                                                     gTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcg                     <  2:233546‑M2/136‑110 (MQ=255)                                                                                                                ccATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctac          >  1:207055‑M2/1‑16 (MQ=255)                                                                                                                  gttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTg        >  2:60370‑M2/5‑136 (MQ=255)                                                                                                                   tAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaa                <  1:242807‑M2/127‑115 (MQ=255)                                                                                                                   tAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaa                <  1:199564‑M2/127‑115 (MQ=255)                                                                                                                   tAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaa                >  2:199564‑M2/1‑13 (MQ=255)                                                                                                                   tAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaa                >  2:242807‑M2/1‑13 (MQ=255)                                                                                                                      CATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGaaaa    >  2:64100‑M2/1‑136 (MQ=255)                                                                                                                        tAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGaaaaaa  <  2:138562/136‑1 (MQ=255)                                                                                                                               |                                                                                                                                 ATCATGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAA  >  NC_002947/1015696‑1015950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.