New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1849125 =	0 (0.000)	16 (1.780)	13/254	0.1	86.5%	coding (660/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 2184368	5 (0.560)					intergenic (+175/+93)	PP_1931/PP_5486	hypothetical protein/hypothetical protein

CACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCAC  >  NC_002947/2184246‑2184464                                                                                                                           |                                                                                                 cacaTCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGcggc                                                                                     >  2:149567/1‑136 (MQ=255) cacaTCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTAGGTCGATAGcggc                                                                                     >  2:172898/1‑136 (MQ=255) cacaTCGCCACATGCGCCCCAGCACGGCGATTAGAGCTAAACCACGCAAAATCTTGCCAGTTAGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGAAATTCGCGTGATTTCACACAGCCTGggacggcaggcga                                                                                     <  2:146073‑M2/136‑14 (MQ=255)                 ccccAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggtggccgt                                                                     >  2:17624‑M2/1‑107 (MQ=255)                               tttGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgt                                                                                     <  1:163003‑M2/106‑14 (MQ=255)                               tttGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgt                                                                                     >  2:163003‑M2/1‑93 (MQ=255)                                ttGAGCTAAACCTCGCAATTTCTTGCGAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCATCGCATTTCGCGTGTTTTCACTCAGCCTGtgtcggcaggcgttcttcgaggtggccgtccttgagctgattga                                                      >  1:35189‑M2/1‑92 (MQ=255)                                           cACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttg                                           <  1:186332‑M2/136‑56 (MQ=255)                                                aaTTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcg                                      <  1:141558‑M2/136‑61 (MQ=255)                                                aaTTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcg                                      <  1:142854‑M2/136‑61 (MQ=255)                                                aaTTTCTTGCCAGTTTGGCAAGCCTCTCTAGAACCCTGCGCCCTTCAACGCATTTCGCGAGTTTTCACACAGACTGggtcggcaggcgttcttcgaggtggccgaccttgagctgattgaccgcgtgcttgatgcg                                      <  1:179078‑M2/136‑61 (MQ=255)                                                aaTTTCTTGCCAGTTTGGCAAGCCACTCTAGATCCCTGCGCCCTTCAACGCATTACGCGTGTTTTCACACAGCCTCggtcggcaggcgttcttcgaggtggccgtccttgagctgaatgaccgcgtgcttgatgcg                                      <  2:1417‑M2/136‑61 (MQ=255)                                                  tttCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgtt                                    <  1:178104‑M2/136‑63 (MQ=255)                                                    tCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcg                                  >  2:197463‑M2/1‑72 (MQ=255)                                                               tGGCAAGCCTCTCTAGATCCCAGCGCCCTTCAACGCATATCGCGTGTATTCACACAGACTCGGTCGAAAGCGGCCGGCCGATCATCAGAGAAAGGGCTAGCCTCGCTATCCGCAAATGCCCTACAGTAACGATggg                       >  1:26838/1‑136 (MQ=255)                                                                    aGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatgg                  >  2:60795‑M2/1‑56 (MQ=255)                                                                                   cTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGc        <  1:42272/131‑1 (MQ=255)                                                                                   cTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGc        >  2:42272/1‑131 (MQ=255)                                                                                    tGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcggctcatgcgcag  <  1:216088‑M2/136‑97 (MQ=255)                                                                                                                tCACACAGCCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcggctcatgcg     <  2:137368‑M2/105‑94 (MQ=255)                                                                                                                tCACACAGCCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcgttgatggtgcggctcatgcg     >  1:137368‑M2/1‑12 (MQ=255)                                                                                                                           |                                                                                                 CACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCAC  >  NC_002947/2184246‑2184464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.