Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	5752111	5752176	66	2 [1]	[1] 2	PP_5043	PhoPQ‑activated pathogenicity‑like protein

CTGCATCGGGTCCATCAGTGCCATCAACCGAGCGAAGGCCGGGCTGCCCAACTGCTGCAATACCTCCGCAGCCTGATAGGACCAAAGCGCCAATGGCCATGAACCACCGTACCGCTTGCGCAAGCCCTCCAGCATGCTGGAAGTGTCGGCAACATCGATGACGCTGGGCACGATGGCAATTACCCGGTCATCGGC  >  NC_002947/5752118‑5752312                                                            |                                                                                                                                        cTGCATCGGGTCCATCAGTGCCATCAACCGAGCGAAGGCCGGGCTGCCCAACTGCTGCAATACCTCCGCAGCCTGATAGGACCAAAGCGCCAATGGCCATGAACCACCGTACCGCTTGCGCAAGCCCTCCAGCATg                                                             >  1:27563/1‑136 (MQ=255)                                                            aTACCTCCGCAGCCTGATAGGACCAAAGCGCCAATGGCCATGAACCACCGTACCGCTTGCGCAAGCCCTCCAGCATGCTGGAAGTGTCGGCAACATCGATGACGCTGGGCACGATGGCAATTACCCGGTCATCGGc  >  2:164431/1‑136 (MQ=255)                                                            |                                                                                                                                        CTGCATCGGGTCCATCAGTGCCATCAACCGAGCGAAGGCCGGGCTGCCCAACTGCTGCAATACCTCCGCAGCCTGATAGGACCAAAGCGCCAATGGCCATGAACCACCGTACCGCTTGCGCAAGCCCTCCAGCATGCTGGAAGTGTCGGCAACATCGATGACGCTGGGCACGATGGCAATTACCCGGTCATCGGC  >  NC_002947/5752118‑5752312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑