Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	2229025	2229064	40	3 [1]	[1] 2	PP_1962	site‑specific recombinase

TCGGGTAGCCTTAAACTTTCAGGAATTAGCTTGTTGAGCGATAAGGAAAGCCAAAATCGCAACATGAAAAACAGGCCTGAATAATGACTCGGTTGTCCACTTGCTTTTGCGTCGTCGAGGGCCCGATTAAGCATCGGATTTGTTATGAGATCCAAGTGC  >  NC_002947/2229042‑2229200                        |                                                                                                                                        tCGGGTAGCCTTAAACTTTCAGGAATTAGCTTGTTGAGCGATAAGGAAAGCCAAAATCGCAACATGAAAAACAGGCCTGAATAATGACTCGGTTGTCCACTTGCTTTTGCGTCGTCGAGGGCCCGATTAAGCATCg                         <  1:227344/136‑1 (MQ=255)                        aaTTAGCTTGTTGAGCGATAAGGAAAGCCAAAATCGCAACATGAAAAACAGGCCTGAATAATGACTCGGTTGTCCACTTGCTTTTGCGTCGTCGAGGGCCCGATTAAGCATCGGATTTGTTATGAGATCCAAGTGc  >  2:173201/1‑136 (MQ=255)                        |                                                                                                                                        TCGGGTAGCCTTAAACTTTCAGGAATTAGCTTGTTGAGCGATAAGGAAAGCCAAAATCGCAACATGAAAAACAGGCCTGAATAATGACTCGGTTGTCCACTTGCTTTTGCGTCGTCGAGGGCCCGATTAAGCATCGGATTTGTTATGAGATCCAAGTGC  >  NC_002947/2229042‑2229200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑