New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	744925 =	NA (NA)	15 (0.750)	12/262	0.4	71.6%	intergenic (‑587/+44)	PP_0636/PP_0637	cold shock DNA‑binding domain‑containing protein/transposase
	?	NC_002947	1015813 =	6 (0.300)					intergenic (‑40/‑728)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3

GCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTAc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/745041‑744925 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTG  >  NC_002947/1015813‑1015944                                                                                                                                                                                                                                                           GCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACATAACAAAGATGCGAAAA                                                                                                                   >  2:295615/1‑136      ACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGTGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTGATGGATCGGTTACTTAACATAGTTGCGAAAAGTGTG                                                                                                              <  1:60515/136‑1            CATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACATAACAAAGATGCGAAAAGTGTGACATGG                                                                                                        >  1:171088/1‑136             ATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACATAACAAAGATGCGAAAAGTGTGACATGGA                                                                                                       >  2:311186/1‑136                           ACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAA                                                                                         >  1:471375/1‑136                                  GCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTA                                                                                  <  2:332740/136‑1                                       TGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAA                                                                             >  1:53082/1‑136                                       TGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGATCATGGATCGGTTACATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAA                                                                             >  1:158193/1‑136                                                        CCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTT                                                            <  1:508200/136‑1                                                          AGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTAT                                                          <  1:336936/136‑1                                                                               GCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAA                                     <  1:455797/136‑1                                                                                                    GGGTTCATGGATCGGTTACATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATT                >  2:269998/1‑136                                                                                                                  GTTACATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAGGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTt  >  2:440734/1‑135                                                                                                                  GTTACATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTG  >  2:116003/1‑136                                                                                                                  GTTACATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTG  >  2:284807/1‑136                                                                                                                                                                                                                                                           GCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTAc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/745041‑744925 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTG  >  NC_002947/1015813‑1015944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.