New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1849128	1 (0.050)	17 (0.860)	14/256	0.3	69.4%	coding (657/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	2182694 =	14 (0.710)					intergenic (+103/‑63)	PP_5485/PP_1931	GNAT family acetyltransferase/hypothetical protein

GTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAGCAAC  >  NC_002947/1849002‑1849263                                                                                                                               |                                                                                                                                        cacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGt                                                                                                                                <  2:274111‑M1/13‑1 (MQ=255)       gcgcACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCg                                                                                                                          >  1:423613/1‑136 (MQ=255)           catgcggcccagcacggcgatttgagctaatccacgcaatttcttgccagtttggctagcgtctctagatccctgcgcccttctacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGt                                                                                                                      >  2:248073‑M1/114‑136 (MQ=255)               cTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCAAGGTCcagactgtgtgaaaacgcccgcc                                                                                                                  >  1:264093‑M1/1‑113 (MQ=255)                            gTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaacctt                                                                                                     >  2:387618‑M1/1‑100 (MQ=255)                               tttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTg                                                                                                  <  1:515143‑M1/43‑1 (MQ=255)                               gATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgataacgcccgcggttgtctaaccttctg                                                                                                  >  2:102357‑M1/1‑97 (MQ=255)                               gATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctg                                                                                                  >  2:495118‑M1/1‑97 (MQ=255)                                ttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGa                                                                                                 >  1:243648‑M1/93‑136 (MQ=255)                                ttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGa                                                                                                 >  1:274111‑M1/93‑136 (MQ=255)                                         tGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtga                                                                                        >  1:326573‑M1/1‑87 (MQ=255)                                          tcaGTTCTTGGTGGGCTTTCTGCAGGGTTTCGGCCATGCTGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgac                                                                                       <  1:32722‑M1/135‑51 (MQ=255)                                               tcttcGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtgg                                                                                  <  2:187581‑M1/136‑56 (MQ=255)                                               tcttcGGGGTCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCTTGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtgg                                                                                  <  1:353851‑M1/136‑56 (MQ=255)                                                    tcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCg                                                                             >  2:35294‑M1/73‑136 (MQ=255)                                                                      ttCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatc                                                           >  1:128733‑M1/1‑58 (MQ=255)                                                                         ggCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaa                                                        <  1:93815‑M1/136‑82 (MQ=255)                                                                           ccATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaagg                                                      <  1:143286‑M1/136‑84 (MQ=255)                                                                                    tgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAg                                             <  1:227344‑M1/96‑1 (MQ=255)                                                                                       tGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaac                                          <  2:128733‑M1/136‑96 (MQ=255)                                                                                       gcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGTTGGGGTCGTTGATGGTGCGGCTCATGCGCAgcgc                                          <  1:20940‑M1/99‑1 (MQ=255)                                                                                       gcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAgcgc                                          <  1:234121‑M1/99‑1 (MQ=255)                                                                                       gcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAgcgc                                          <  2:353882‑M1/99‑1 (MQ=255)                                                                                       gcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAgcgc                                          <  1:143298‑M1/99‑1 (MQ=255)                                                                                       gcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAgcgc                                          <  1:307726‑M1/99‑1 (MQ=255)                                                                                            tGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcagg                                     <  2:464991‑M1/136‑101 (MQ=255)                                                                                                cgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGcc                                 >  2:199843‑M1/29‑136 (MQ=255)                                                                                                   atttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCt                              <  2:25727‑M1/111‑1 (MQ=255)                                                                                                      tcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAg                           <  2:183754‑M1/114‑1 (MQ=255)                                                                                                           aGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccgg                      >  1:514175‑M1/1‑21 (MQ=255)                                                                                                                tcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCcaggcag                 >  2:378890‑M1/13‑136 (MQ=255)                                                                                                                   gCTGCCCTTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctg              <  2:264093‑M1/136‑124 (MQ=255)                                                                                                                          aTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgcccgtggggccaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctggacgact       >  2:132339‑M1/1‑6 (MQ=255)                                                                                                                          aTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctggacgact       >  1:381330‑M1/1‑6 (MQ=255)                                                                                                                           gGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAg      <  1:121981‑M1/135‑1 (MQ=255)                                                                                                                           gGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAg      <  2:415637‑M1/135‑1 (MQ=255)                                                                                                                           gGGTCGGCAGGCGTTCTTCGAGGTGGCCGACCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAATGCCAGGCAGGCGAGGATCAg      <  2:315560‑M1/135‑1 (MQ=255)                                                                                                                             GTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAGCa    >  1:533161‑M1/1‑136 (MQ=255)                                                                                                                               ccagactgtgtgagaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctggacgactacgtc  <  1:102357‑M1/136‑136 (MQ=255)                                                                                                                               ccagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctggacgactacgtc  <  1:495118‑M1/136‑136 (MQ=255)                                                                                                                               CGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAGCAAc  >  1:499963‑M1/1‑136 (MQ=255)                                                                                                                               |                                                                                                                                        GTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAGCAAC  >  NC_002947/1849002‑1849263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.