Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	5821895	5821910	16	2 [1]	[1] 3	PP_5092/pilT	NLP/P60 protein/twitching motility protein

CTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAA  >  NC_002947/5821898‑5822046              |                                                                                                                                        acaaaaTACGTGTGGGTGGGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCATCCGCCGCCCCGCCCTGCa               <  1:203785/131‑1 (MQ=255)              gggAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATACCCACCCCCCCCCCCCCCCGCAGCACAGAAGCCaa  >  1:184311/1‑136 (MQ=255)              gggAGCGGGCGCGCCCGCGAAAGGGCCATTGCAGGTACTACAAGCCTTTGATCAACCCTCGCACCCTCAGCCTCCGCAACGCCCCCTCCAACGGCCGCAGCCCCACCCCCCCCCCCCCCGGCACCCCGGAAgcccc  >  1:390998/1‑132 (MQ=255)              |                                                                                                                                        CTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAA  >  NC_002947/5821898‑5822046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑