Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947195,6340CT58.3% ‑3.8 / 10.2 12T380T (ACC→ACTPP_0168putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base C (2/3);  new base T (4/3);  total (6/6)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.88e-01
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

GCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGG  >  NC_002947/195503‑195767
                                                                                                                                   |                                                                                                                                     
gcgaaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGGAATTTCGAGCAGCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACaccacaaccc                                                                                                                                   >  2:117608/4‑135 (MQ=1)
    attaCGCCTACAACATCGTTTCGCCCGTCAGCGTCACAATCGAGAACGCCACAGGCGGTATTTGCGCGCATGTGACCCCTAATCCGCCCCCGGCCCTTCCCAGGATACACGACTCGGTCGACACCACTACCGCGAc                                                                                                                               <  2:436204/133‑1 (MQ=2)
               aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAAGTTCGAGCAACTGACCCCGAAACCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGCCCCTGACGGCGa                                                                                                                    >  2:450832/1‑136 (MQ=255)
                                    gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg                                                                                               >  1:133069/1‑136 (MQ=17)
                                      cACCATCTACACCGCCACCGGCGTAATTTTCGCGCAACTGACCCCTAATCCGCCCCCGGCCCAGCCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc                                                                                             <  1:146755/136‑1 (MQ=11)
                                                                aTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGac                                                                   >  2:424951/1‑135 (MQ=17)
                                                                         aaCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACgg                                                                                                                       >  1:259014/1‑75 (MQ=39)
                                                                         aaCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACgg                                                                                                                       <  2:259014/75‑1 (MQ=39)
                                                                                                        aagtaTCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGTTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAACCTGCCCAGACGCCTGTAACCGTGAACCTGTCCAAc                           <  2:371442/132‑1 (MQ=255)
                                                                                                                aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc                   <  2:252259/136‑1 (MQ=37)
                                                                                                                   aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt                >  1:438058/1‑136 (MQ=255)
                                                                                                                   aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATAACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCCTGAACCAGTCCAACCGCCAAACGaa                >  1:506708/1‑135 (MQ=14)
                                                                                                                            acacCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGa       <  1:448728/136‑1 (MQ=40)
                                                                                                                                caccaccGCGACCCTGACGGCGAGCCCGGCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCg   <  1:400501/136‑1 (MQ=255)
                                                                                                                                 accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg  <  1:142736/136‑1 (MQ=40)
                                                                                                                                   |                                                                                                                                     
GCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGG  >  NC_002947/195503‑195767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: