| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,638,041 | 0 | T | G | 53.8% | 1.3 / 17.2 | 26 | V174G (GTG→GGG) | PP_3201 | BNR domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (8/4); new base G (0/14); total (8/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.17e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.06e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGCAGCCGAGGCTGCCGCAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTGGCCATGCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGCAACCAGGTGTACATCGCCGGCGA > NC_002947/3637907‑3638164 | ggcagCCGAGGCTGCCGCAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTg > 2:457435/1‑136 (MQ=255) gcagCCGAGGCTGCCGCAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTgg > 2:295316/1‑136 (MQ=255) gcagCCGAGGCTGCCGCAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTgg > 1:240466/1‑136 (MQ=255) gcagCCGAGGCTGCCGCAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTAGTCGGTGCCGACGGGGTgg > 1:499465/1‑136 (MQ=255) gCAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTGGCCATGCGCACcgacg > 1:15385/1‑136 (MQ=255) aGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTAGGTGCCTACGGGGTGGCCAATCGCACCgacgac > 1:58970/1‑136 (MQ=255) tCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACAGATGCCCGCAACGGCCTGGTCCTCGGTGCCTACGGGGTGGCCATGCGCACCGACGACGGCGGgcgc > 2:287319/1‑136 (MQ=255) gcggggggcgccgCAACGGCTGCGGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTTAATTTCACCGATGCCCGCACCGGCCTGGTCGTCGGGGCCTACGGGGTGGCCATGCGCACCGACGACGGCGGGCGCAGc < 2:267826/130‑1 (MQ=255) ccggggggcggcgCAACGGCTGCGGGCCGACGGCGCGTACAAGCCGTTGTTGGCCCTGAATTTCACCGATCCCCGCAACGGCCTGGGCGTCGGTGCCTACGGGGTGCCCATGCGCACCGACGACGGCGGGCGCAGc < 2:43759/130‑1 (MQ=255) cgcAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTAGGTGCCTACGGGGTGGCCATGCGCACCGACGACGGGGGGCGCCGCTGGCAGGCggg > 1:191095/1‑135 (MQ=255) cctaCGGCGCTTACAAGCGGTTGTTGGCCCTCAATTACACCGAGCCCCGCAACGGCCGGGTCGGCGGTGCCTACGGGGTGGCCATGCCCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGcc < 2:15385/133‑1 (MQ=255) ccGAGGGCGGGTACACGCGGTTGTTGGCCTTGATTTTCACCGATGCCCGCACCGGCCGGGGCGTCGGTCCCTACGGGGGGGCCAGGCCCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGcc < 2:209955/136‑1 (MQ=255) ccGACGGCGCGGACACCCCGTGGTTGGCCCTGAATTTCACCGATCCCCGCAACGGCCTGGGCGGCGGTGCCTACGGGGGGGCCATGCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCTGACTGcc < 2:105111/136‑1 (MQ=255) ccGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCACCGGCCTGGTCGTCGGGGCCTACGGGGGGGCCATGCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGcc < 1:473863/136‑1 (MQ=255) ccGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGGCGGCGGTGCCTACGGGGGGGCCATGCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGcc < 1:36143/136‑1 (MQ=255) ccGACGGCGCGCACAAGCCGTTGTTGGCCCTCAATTTCACCGATCCCCGCAACGGCCGGGTCGGGGGGGCCTACGGGGGGGCCAGGCCCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGcc < 2:334561/136‑1 (MQ=255) ggCGGGTACAAGCGGTTGTTGGCCCTTATTTTCACCGATGCCCGAAACGGCGTGGTCGGCGGGGCCTAGGGGGGGGCCATGCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACg < 1:25713/136‑1 (MQ=255) gcgcGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGGCGGCGGTGCCTACGGGGGGGCCATGCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACgg < 1:105252/136‑1 (MQ=255) aGCCGTTGTTGGCCCTTAATTTCCCCGATGCCCGCAACGGCGTGGGCGTCGGTGCCTCCGGGGGGGCCATCCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACt < 2:140295/136‑1 (MQ=255) acACCGAGCCCCCCACCGGCCTGGGCGGCGGTGCCTCCGGGGGGGCCATGCGCCCCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGgcgcg < 1:121970/135‑1 (MQ=255) cccGATGCCCGCACCGGCGTGGGCGTGGGGGCCTAGGGGGTGGCCAGGCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGcc < 2:205054/135‑1 (MQ=255) gATGCCCGCACCGGCCTGGTCGGCGGTGCCTACGGGGGGGCCATGCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAg < 2:415339/136‑1 (MQ=255) tGCCCGCAAGGGCGTGGTCGTGGGTGCCTCGGGGGGGGCCTTGCGCACGGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGc < 2:58970/136‑1 (MQ=255) ggCCCGCAACGGCCTGGGCGTCGGTGCCTACGGGGGGCCCATCCCCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGc < 1:217011/135‑1 (MQ=255) gcgcgggTGCCTAGGGGGGGGCCTTGCGCACCTCCGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGCAACCAGGTGTACATCGc < 2:240466/131‑1 (MQ=255) gggCCTCCGGGGGGGCCCTGCGCCCCGCCGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGCAACCAGGTGTACATCGCCGGCGa < 2:362303/134‑1 (MQ=255) | GGCAGCCGAGGCTGCCGCAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTGGCCATGCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGCAACCAGGTGTACATCGCCGGCGA > NC_002947/3637907‑3638164 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |