Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_002947	3,582,655	(GCGCCTGT)1→2	coding (78/738 nt)	PP_3158 →	hypothetical protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3582641	0 (0.000)	8 (0.230) +GCCTGTGC	10/220	0.6	100%	coding (64/738 nt)	PP_3158	hypothetical protein
	?	NC_002947	3582642 =	0 (0.000)					coding (65/738 nt)	PP_3158	hypothetical protein

ATTTTCGGGCTCTATGCTTGGCCAGGCCGCGCTGACTCCCGGCGCAGCCGCCCAATATCGACCCGGTGCCGATGGTTGCAAGCTACGCGAATTTCCTCCCCCGCCTGCTACTGACAGGTGCCCTGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3582513‑3582641 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGTGCGCCTGTACGCAGCAGCAGGGCCGTGACATGGTCAACCAGCTCGGCAACGGCAAACCCAGCGAGCTGTTCCAGACCAGCGTCGACCGCCTGGCCACGCTGTCGATGCGCGACAACCTGCAAAGCC  >  NC_002947/3582642‑3582773                                                                                                                                  ||||||||                                                                                                                                     tTTTTTGGGCTCTATGCATGGCCAGGCCGCGGTGACTCCCGGCGGATCCGCCCAATATCGAACCGGGTGCGTTGGTTGCAAGCTACGCGAATTTCCTGCCCCGCCTGCTACTGACAGGTGCCCTGGCATGCCTGTG                                                                                                                                       <  2:451756/135‑1                 CTTGGCCAGGCCGCGCTGACTCCCGGCGCAGCCGCCCAATATCGACCCGGTGCCGATGGTTGCAAGCTACGCGAATTTCCTCCCCCGCCTGCTACTGACAGGTGCCCTGGCATGCCTGTGCGCCTGTGCGCCTGTA                                                                                                                       <  1:144893/136‑1                 CTTGGCCAGGCCGCGCTGACTCCCGGCGCAGCCGCCCAATATCGACCCGGTGCCGATGGTTGCAAGCTACGCGAATTTCCTCCCCCGCCTGCTACTGACAGGTGCCCTGGCATGCCTGTGCGCCTGTGCGCCTGTA                                                                                                                       <  2:604898/136‑1                            CGCGCTGACTCCCGGCGCAGCCGCCCAATATCGACCCGGTGCCGATGGTTGCAAGCTACGCGAATTTCCTCCCCCGCCTGCTACTGACAGGTGCCCTGGCATGCCTGTGCGCCTGTGCGCCTGTACGCAGCAGCAG                                                                                                            >  2:157407/1‑136                                           CGCAGCCGCCCAATATCGACCCGGTGCCGATGGTTGCAAGCTACGCGAATTTCCTCCCCCGCCTGCTACTGACAGGTGCCCTGGCATGCCTGTGCGCCTGTGCGCCTGTACGCAGCAGCAGGGCCGTGACATGGTC                                                                                             >  2:338008/1‑136                                                      AATATCGACCCGGTGCCGATGGTTGAAAGCTACGCGAATTTACTCCCCCGCCTGCTACTGACAGGTGCCCTGGCATGCCTGTGCGCCTGTGCGCCTGTACGCAGCAGCAGGGCCGTGACATGGTCAACCAGCTCGG                                                                                  >  2:843539/1‑136                                                                  GTGCCGATGGTTGCAAGCTACGCGAATTTCCTCCCCCGCCTGCTACTGACAGGTGCCCTGGCATGCCTGTGCGCCTGTGCGCCTGTACGCAGCAGCAGGGCCGTGACATGGTCAACCAGCTCGGCAACGGCAAACC                                                                      <  2:559964/136‑1                                                                                 AGCTACGCGAATTTCCTCCCCCGCCTGCTACTGACAGGTGCCCTGGCATGCCTGTGCGCCTGTGCGCCTGTACGCAGCAGCAGGGCCGTGACATGGTCAACCAGCTCGGCAACGGCAAACCCAGCGAGCTGTTCCA                                                       <  1:697176/136‑1                                                                                                                        GCCCTGGCATGCCTGTGCGCCTGTGCGCCGGTACGCAGCAGCAGGGCCGTGACATGGTCAACCAGCTCGGCAACGGCAAACCCAGCGAGCTGTTCCAGACCAGCGTCGACCGCCTGGCCACGCTGTCGATGCGCGA                <  2:79576/136‑1                                                                                                                            TGGCATGCCTGTGCGCCTGTGCGCCTGTACGCAGCAGCAGGGCCGTGACATGGTCAACCAGCTCGGCAACGGCAAACCCAGCGAGCTGTTCCAGACCAGCGTCGACCGCCTGGCCACGCTGTCGATGCGCGACAAC            >  2:850641/1‑136                                                                                                                              GCATGCCTGTGCGCCTGTGCGCCTGTACGCAGCAGCAGGGCCGTGACATGGTCAACCAGCTCGGCAACGGCAAACCCAGCGAGCTGTTCCAGACCAGCGTCGACCGCCTGGCCACGCTGTCGATGCGCGACAACCT          <  1:336580/136‑1                                                                                                                              GCATGCCTGTGCGCCTGTGCGCCTGTACGCAGCAGCAGGGCCGTGACATGGTCAACCAGCTCGGCAACGGCAAACCCAGCGAGCTGTTCCAGACCAGCGTCGACCGCCTGGCCACGCTGTCGATGCGCGACAACCT          <  1:680521/136‑1                                                                                                                                 TGCCTGTGCGCCTGTGCGCCTGTACGCAGCAGCAGGGCCGTGACATGGTCAACCAGCTCGGCAACGGCAAACCCAGCGAGCTGTTCCAGACCAGCGTCGACCGCCTGGCCACGCTGTCGATGCGCGACAACCTGCA       >  2:647953/1‑136                                                                                                                                      GTGCGCCTGTGCGCCTGTACGCAGCAGCAGGGCCGTGACATGGTCAACCAGCTCGGCAACGGCAAACCCAGCGAGCTGTTCCAGACCAGCGTCGACCGCCTGGCCACGCTGTCGATGCGCGACAACCTGCAAAGCC  >  2:463361/1‑136                                                                                                                                  ||||||||                                                                                                                                     ATTTTCGGGCTCTATGCTTGGCCAGGCCGCGCTGACTCCCGGCGCAGCCGCCCAATATCGACCCGGTGCCGATGGTTGCAAGCTACGCGAATTTCCTCCCCCGCCTGCTACTGACAGGTGCCCTGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3582513‑3582641 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGTGCGCCTGTACGCAGCAGCAGGGCCGTGACATGGTCAACCAGCTCGGCAACGGCAAACCCAGCGAGCTGTTCCAGACCAGCGTCGACCGCCTGGCCACGCTGTCGATGCGCGACAACCTGCAAAGCC  >  NC_002947/3582642‑3582773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.