| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 744925 = | NA (NA) | 22 (0.600) | 18/262 | 0.4 | 84.7% | intergenic (‑587/+44) | PP_0636/PP_0637 | cold shock DNA‑binding domain‑containing protein/transposase |
| ? | NC_002947 | 1015813 = | 4 (0.110) | intergenic (‑40/‑728) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 | |||||
TATCAAGAATGATGACATCATGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATC > NC_002947/1015680‑1015942 | cacgtcctggagcgactgccgcacgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggggggttcatggatcggttaCAt > 1:903047‑M2/134‑136 (MQ=255) aTCAAGAATGATGACATCATGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATa > 2:548834/1‑136 (MQ=255) tCAAGAATGATGACATCATGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATaa > 1:416418/1‑136 (MQ=255) cAAGAATGATGACATCATGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAAc > 1:911655/1‑136 (MQ=255) aaGAATGATGACATCATGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTAAGGTATGAAATAACCATAGCATAACa > 1:785947/1‑136 (MQ=255) cgactgccgcacgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGc < 2:13571‑M2/14‑1 (MQ=255) gccgcacgcctcatcggtagcagcctacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGaaaa > 2:745207‑M2/118‑136 (MQ=255) gccgcacgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGaaaa < 1:839066‑M2/19‑1 (MQ=255) gcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGAc < 1:334204‑M2/26‑1 (MQ=255) gactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGt < 1:250180‑M2/41‑1 (MQ=255) cacaGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtcca < 2:726273‑M2/136‑36 (MQ=255) acaGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccac > 1:548834‑M2/1‑100 (MQ=255) gctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTa < 2:542‑M2/52‑1 (MQ=255) gctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtagggggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTa < 2:727908‑M2/52‑1 (MQ=255) gctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggtaaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTacac > 2:677506‑M2/82‑136 (MQ=255) tgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACaa > 1:839359‑M2/80‑136 (MQ=255) ccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGa < 1:745207‑M2/59‑1 (MQ=255) gaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTa > 2:473286‑M2/73‑136 (MQ=255) aactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAg > 2:739470‑M2/72‑136 (MQ=255) cgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAGTTAGTGGAATCGTTTACACAAGAATTTAGCCGtttt > 2:823021‑M2/65‑136 (MQ=255) ccaccGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCTTAACAAAGtaagggatccatcatccccccattccacccgtccaccggattcccgatgctgtgctcccgattt < 2:454430‑M2/136‑65 (MQ=255) atgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATgcgc < 2:252917‑M2/80‑1 (MQ=255) ttggcttccaccttgtggtaggtggggttcatggaccggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATtat > 2:790680‑M2/43‑136 (MQ=255) gcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATaaa < 1:473286‑M2/97‑1 (MQ=255) ttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAAc < 2:832211‑M2/99‑1 (MQ=255) ttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAAc < 1:815528‑M2/99‑1 (MQ=255) aTGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaag < 2:109452‑M2/136‑107 (MQ=255) tGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagt > 1:399317‑M2/1‑29 (MQ=255) gggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGAt < 1:602027‑M2/91‑1 (MQ=255) gggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGACGTTTTTTATGCGCGATTAAGTGAt > 2:602027‑M2/19‑109 (MQ=255) gggttcatggatcggttaCATAACAAAGATCCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGAtt > 2:964841‑M2/19‑136 (MQ=255) gTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcg < 2:649357‑M2/136‑110 (MQ=255) aaaTAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaa > 1:109452‑M2/1‑22 (MQ=255) ccATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctac > 1:454430‑M2/1‑16 (MQ=255) | TATCAAGAATGATGACATCATGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATC > NC_002947/1015680‑1015942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |