New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2477132 | 3 (0.080) | 3 (0.100) | 3/218 | 1.4 | 34.3% | intergenic (+44/+105) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
? | NC_002947 | = 4329770 | 9 (0.290) | intergenic (+142/+125) | pbpG/PP_3795 | murein D‑alanyl‑D‑alanine endopeptidase/hypothetical protein |
GCAGACAACGCGGCGGATAGCACGGGCTTCGTCCGTGTTCGCGAGGAAACCCGCGCCTACGACGGCCTGCGCCCAATCACCAATGTGTATCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTCGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGCGCCTACAGCGGCCTGTGCATGTCCA > NC_002947/4329665‑4329893 | gCAGACAACGCGGCGGATAGCACGGGCTTCGTCCGTGTTCGCGAGGAAACCCGCGCCTACGACGGCCTGCGCCCAATCACCAATGTGTATCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTc < 2:522267/136‑1 (MQ=255) aCGCGGCGGATAGCACGGGCTTCGTCCGTGTTCGCGAGGAAACCCGCGCCTACGACGGCCTGCGCCCAATCACCAATGTGAATCCACCCCCAATCAGGTGTCGGAGCGGGTTTACCCTCGAATACGGTAGcggcgg < 1:532422/136‑1 (MQ=255) cGTGTTCGCGAGGAAACCCGCGCCTACGACGGCCTGCGCCCAATCACCAATGTGTATCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTCGCGGCGGCAACGGTGAACGGCGGGTGGAAATTg > 2:242754/1‑136 (MQ=255) cGTGTTCGCGAGGAAACCCGCGCCTACGACGGCCTGCGCCCAATCACCAATGTGTATCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTCGCGGCGGCAACGGTGAACGGCGGGTGGAAATTg > 2:56195/1‑136 (MQ=255) tCGCGAGGAAACCCGCGCCTACGACGGCCTGCGCCCAATCACCAATGTGTATCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTCGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCcag > 2:679011/1‑136 (MQ=255) gcgcCTACGACGGCCTGCGCCCAATCACCAATGTGTATCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGAAACGGTGAACGGCTGGTAAAAATTGGCCAGCAggcccggccctt < 2:858665/136‑3 (MQ=14) ccAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgct < 1:539444‑M2/89‑56 (MQ=255) ccAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgct > 2:539444‑M2/1‑34 (MQ=255) aTGTGTATCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTCGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGCGCCTACAGCGGCCt > 2:897866/1‑136 (MQ=255) tATCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTCGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGCGCCTACAGCGGCCTGTGCa < 1:28357/136‑1 (MQ=255) cccccAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggttggagtcattcaggcccatgaggatcttgtgc < 2:872636‑M2/136‑124 (MQ=255) cccccAATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTCGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGCGCCTACAGCGGCCTGTGCATGTCCa > 1:695583/1‑136 (MQ=255) | GCAGACAACGCGGCGGATAGCACGGGCTTCGTCCGTGTTCGCGAGGAAACCCGCGCCTACGACGGCCTGCGCCCAATCACCAATGTGTATCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAATACGGTCGCGGCGGCAACGGTGAACGGCGGGTGGAAATTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGCGCCTACAGCGGCCTGTGCATGTCCA > NC_002947/4329665‑4329893 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |