| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,397,876:1 | +A | 11.4% | intergenic (+91/‑95) | PP_1214 → / → ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,397,876 | 1 | . | A | 11.4% | 524.2 / 64.6 | 132 | intergenic (+91/‑95) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| Reads supporting (aligned to +/- strand): ref base . (65/52); new base A (10/5); total (75/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01 | |||||||||||
Only 100 of 144 total aligned reads displayed.
TGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGG > NC_002947/1397727‑1398025 | tGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGcc < 2:3843342/150‑1 (MQ=255)tGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGcc < 2:1638923/150‑1 (MQ=255) aaCGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CAttt < 1:5295285/150‑1 (MQ=255) aaCGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CAttt < 2:158601/150‑1 (MQ=255) aCGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTc < 1:1537474/150‑1 (MQ=255) aCGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTc < 2:1615816/150‑1 (MQ=255) cTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑t < 2:3156942/150‑1 (MQ=255) cTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑t < 2:3829166/150‑1 (MQ=255) aTTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCGTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑tgt < 2:5038758/150‑1 (MQ=255) ttCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACTCC‑CATTTCAA‑A‑tgtg < 1:1582660/150‑1 (MQ=255) ttCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑tgtg < 1:4791163/150‑1 (MQ=255) cAATGCCCAGATTTCCGACGAGATCATGGAATACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑Tgtggt‑g < 2:2927634/150‑1 (MQ=255) cAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑Tgtggt‑g < 2:4594265/150‑1 (MQ=255) cAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGGGAACCCGCGCCGACAGGGGTTACGCC‑CCATTAAA‑A‑Tgtggt‑g > 2:4713267/1‑150 (MQ=255) aTGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCa < 2:3673309/150‑1 (MQ=255) cccAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTa < 1:3673228/150‑1 (MQ=255) cccAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGGAAACCCGCGCCGACAGGGATGACCCC‑CCATTCAA‑A‑GGTGGT‑Gccgga > 2:2502923/1‑146 (MQ=255) ccAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTAc < 1:5019910/150‑1 (MQ=255) ccAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGATTACGCC‑CCTTTCAC‑A‑TGTGGT‑GCAGTAc > 2:5470955/1‑150 (MQ=255) aGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCt < 2:5612935/150‑1 (MQ=255) tttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAA‑A‑TG‑GGC‑GTAATACCTGTa < 2:1897019/150‑1 (MQ=21) ttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAg < 1:345264/150‑1 (MQ=255) ttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAg < 1:4592392/150‑1 (MQ=255) gacgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGc < 1:5462700/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑gg < 2:3394817/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑gg < 1:743076/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑gg < 2:2782954/150‑1 (MQ=255) aTGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTAcc < 1:4719153/150‑1 (MQ=255) ggAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACGTATTAAGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGA‑GGGTTTACCcg > 2:4215675/1‑150 (MQ=255) ggAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCAACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCGGGAGGAGC‑GGGTTTACCcg > 2:4215637/1‑150 (MQ=255) ggAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACAGGGATTACGCC‑CAGTTAAA‑A‑TGTGGT‑GCAGTACCGGGAGGAGC‑GGGTTTAACcg > 2:4215517/1‑150 (MQ=38) gAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACAGGTATTACGCC‑CAGTTAAA‑A‑AGTGGT‑GCAGTACCAGTAGGAGC‑GGGGTTAACcgc > 2:1273044/1‑150 (MQ=38) gAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCGTTCGCGGGTGATGCCGCGCCAACCGGTATTAGGGC‑CCGTGGAA‑A‑GGTGGT‑GGGGGAGCGGTTGGAGG‑GGGGTTAGCcgc > 1:3216237/1‑150 (MQ=255) tAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑tgt < 1:3902378/106‑1 (MQ=255) tAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑tgt > 2:3902378/1‑106 (MQ=255) cAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTTAACCCGCGCCAACACGGATTACCCC‑CAATTACA‑A‑AGTGGG‑GCAGTAACCGTAGGTGC‑CGGGTTAACCGCCCAAGGGCCCGCGCGGTTTTTAGGGATGcgaaaat > 2:287406/1‑144 (MQ=255) cAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCAACACGTAATACCCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCGGTAGGAGC‑GGGGTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGAAGCATCAtt > 2:1264932/1‑150 (MQ=37) ctGAGCGTTTGATAGCGCCGGGGCCGGCCCTGTCGGGGTTAAACCCGCTCCTACCGGT‑TTACCCC‑CCTTTCAA‑ATTGGGGT‑GCCGTACGTTTTGGAGC‑GGTTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTc < 2:4973269/150‑1 (MQ=255) gAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CGTTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGGATCATTTTTTCGa > 2:2242375/1‑150 (MQ=255) aGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCCCACCACAAGGTATTACGCC‑CCTTTCAA‑A‑TGTGGG‑GCAGTAACGGGAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCCGTTTGTAGAGATGCCTAATTTTTTCGAc > 2:2948915/1‑150 (MQ=37) cGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCCCTCCTACAGGTATTACGCC‑CCAGTCAA‑A‑TGTGGT‑GCACTAACGGTAGGAGC‑CGGGTTAACCGCGAAAGGGCCCGCGCACGTTGTAGAGATGCAACAAGTTTTCGACgg > 2:3730950/1‑150 (MQ=25) ttttATCGCGCGTGTGCCGGCCCTTGCGGGTTTAACCCGGCCCCCACCGGTATACCGCC‑CTTTCCAA‑T‑TGTGGT‑GCTTTACCTTTAGGCGG‑GGTTTAACCCGCGAATGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGc < 2:4354331/150‑1 (MQ=255) tGATAGCGCCTGTGCCGGCCCTTTCGCGGGTTAAACCCCTACGACACGTATTAAGCC‑CAATTAAA‑A‑AGTGGT‑GCAGTACAGGTAGGTGCGGGGTTAACCCCCGAACGGGCCGG‑GCCGGGTGTAGAGATTCGAGATTTTTTTGGCgggggt > 2:3286867/1‑147 (MQ=255) gATCGCGCCTGTGCCGGCCCTTTCGCGGTTAAACCCGCCCCTACTGTTATTACGCC‑CTTTTCAA‑A‑TGTGGT‑GCTGTACCTGTTGGAGG‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCttt < 2:1846021/150‑1 (MQ=37) tcgcgcGTGGGCCGGCCCTTGGGCGGGTACCCCGGCTCCTCCTGTTTTCCCGCC‑AATTGCAA‑T‑GGTGGT‑GCCGTCCGTGTTGGGGG‑GGTTTTACCCGGTAACGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTAt < 2:2567521/148‑1 (MQ=255) tcgcgcCGGGGCCGGCCGTTGCGGGGGTAACCCGGCGCGTCCCGGTATTCCGCC‑CTTTTCAA‑T‑GGTGGT‑GCTGTCCGGGTCGGGGG‑GGTTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTAt < 2:5615009/148‑1 (MQ=255) gcgtgggccgccCCTGTCGGGTCTAACCCGGCTCCACCCGGTATACCCCC‑CATTTC‑A‑A‑TGGGGTGGCCTCACCTTTAGGGGG‑GGTTTCACCCGCGAATGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGAct < 2:1606156/144‑1 (MQ=255) ccGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑tgtg > 2:2775230/1‑56 (MQ=255) gccccTTGCGCGGTTAACCCCGCGCCTACCGTTATACCCCA‑CATTTCAA‑T‑GGTGGT‑GCCGACCCGGTTGGAGC‑GGTTTACCCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa < 2:5281642/148‑1 (MQ=255) gCCCTTGCGGGGGTAAACCCGGCTCTAACGGTTTTACCCC‑CATTTAAATT‑TGGGGG‑GCCGGCCGTGTGGGAGG‑GTTTTCACCCGCGAACGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa < 2:1860829/150‑1 (MQ=255) ccTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CCTTTCAA‑A‑TGTGGT‑GCAGTACCTGTGGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCCGTTTTTAGATATGCCTCATTTTTTCGACGGGGTTTATGACTCGGATTATAGGt > 2:756205/1‑150 (MQ=25) gTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCg > 1:1693442/1‑150 (MQ=255) tAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCg < 2:2507321/112‑1 (MQ=255) tAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCg > 1:2507321/1‑112 (MQ=255) tAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCgg > 2:175295/1‑150 (MQ=255) tAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGCT‑GCAGAACCGGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGGTTGTAGAGATGCATCATTTTTACGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCgg > 2:175264/1‑150 (MQ=38) aCCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTc > 1:3183683/1‑150 (MQ=255) aCCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTc > 2:4487617/1‑150 (MQ=255) tcGCTCCTACAGGTACTGCACCACATTTGAA‑A‑TG‑GGC‑GTAATACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc < 1:4154527/149‑1 (MQ=18) ccGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 1:3549983/1‑150 (MQ=255) ccGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 1:3409097/1‑150 (MQ=255) ccGCTCCTACAGGTACTGCACCACATTTGAA‑A‑TG‑GGC‑GTAATACCTGTAGGAGC‑GGGTTTACCCGCGAACGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 1:1882002/1‑150 (MQ=18) ccGCTCCTACAGGTACTGCACCACATTTGAA‑A‑TG‑GGC‑GTAATACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 2:4755345/1‑150 (MQ=18) cGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgcg > 1:2636855/1‑150 (MQ=255) gCTCCTACAGGTACTGCACCACATTTGAA‑A‑TG‑GGC‑GTAATACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCGAGGTATCGACCCCGGCTCgcgc > 2:2909495/1‑150 (MQ=18) tCCTACAGGTACTGCACCACATTTGAA‑A‑TG‑GGC‑GTAATACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGAAGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAt > 2:2563398/1‑150 (MQ=18) ccTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATc > 1:258441/1‑150 (MQ=255) cTACAGTTATTCCGCC‑AATTTAAA‑T‑TGTGGT‑GCAGCCCCTTTTGGAGG‑GGTTTAACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa < 2:2165777/150‑1 (MQ=255) cTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:4147370/1‑150 (MQ=255) cTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:879690/1‑150 (MQ=255) cTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:1294299/1‑150 (MQ=255) cTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 1:2964950/1‑150 (MQ=255) tACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGAt < 2:2510497/120‑1 (MQ=255) tACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:2147393/1‑150 (MQ=255) tACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 2:4519346/1‑150 (MQ=255) tACAGGTACTGCACCACATTTGAA‑A‑TG‑GGC‑GTAATACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:2292607/1‑150 (MQ=21) tACAGGTACTGCACCACATTTGAA‑A‑TG‑GGC‑GTAATACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:3965967/1‑150 (MQ=21) tACAGGTACTGCACCACATTTGAA‑A‑TG‑GGA‑GTAATACCTGTAGGAGC‑GGGTTTACCCGCGAATGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:3452668/1‑150 (MQ=21) aCAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAcc > 1:1049564/1‑150 (MQ=255) aCAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAcc > 2:2199431/1‑150 (MQ=255) cAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATAACCg > 1:4950502/1‑150 (MQ=255) aGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 1:4515657/1‑150 (MQ=255) aGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 1:2450205/1‑150 (MQ=255) aGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 1:4515405/1‑150 (MQ=255) aGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 2:2589632/1‑150 (MQ=255) ggTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGc > 1:280952/1‑150 (MQ=255) gTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCt > 1:4950151/1‑150 (MQ=255) gTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCt > 2:2399730/1‑150 (MQ=255) ttACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACGGGCTATg > 1:46050/1‑150 (MQ=255) ttACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATg > 1:727019/1‑150 (MQ=255) gCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATTACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 2:4056573/1‑150 (MQ=255) gCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 2:4206448/1‑150 (MQ=255) gCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 2:4950455/1‑150 (MQ=255) gCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 1:215867/1‑150 (MQ=255) gCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 1:1434410/1‑150 (MQ=255) gCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCGGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 2:2578688/1‑150 (MQ=255) cc‑cATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTg > 1:4702389/1‑150 (MQ=255) c‑cATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTgg > 1:5506699/1‑150 (MQ=255) c‑cATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTgg > 2:3669727/1‑150 (MQ=255) c‑cATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTgg > 1:2024596/1‑150 (MQ=255) | TGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑A‑TGTGGT‑GCAGTACCTGTAGGAGC‑GGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGG > NC_002947/1397727‑1398025 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |