| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 661518 = | 211 (0.870) | 17 (0.070) | 9/260 | NT | 7.4% | intergenic (+25/+102) | PP_0568/PP_0569 | hypothetical protein/MATE efflux family protein |
| ? | NC_002947 | 661599 = | 226 (0.990) | intergenic (+106/+21) | PP_0568/PP_0569 | hypothetical protein/MATE efflux family protein | |||||
ACGTTGGGGTGGGTTGGGTGGCGGTTGCAGCAGAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/661673‑661518‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcgaTGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTG > NC_002947/661599‑661747 ACGTTGGGGTGGGTTGGGTGGCGGTTGCAGCAGAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTG < 1:5031273/150‑1 TTGGGGTGGGTTGGGTGGCGGTTGCAGCAGAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCACCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCG > 1:4970974/1‑150 TGGGGTGGGTTGGGTGGCGGTTGCAGCAGAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGC < 2:2540333/150‑1 TGGGGTGGGTTGGGTGGCGGTTGCAGCAGAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGC < 1:4964900/150‑1 TTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCAC > 2:1600378/1‑150 CATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCCCAGGTCTCTCTGCTGCAACCGCCACCCCACCCAC > 1:3845719/1‑150 ACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCCCCCCAACG > 2:3762914/1‑150 ACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACG > 2:932842/1‑150 ACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACG > 2:3763048/1‑150 GCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGC > 2:2924074/1‑150 GCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGC > 1:5372065/1‑150 GCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACCTCACCGC > 1:5372156/1‑150 GCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCCACCCACCCCCACCTCACCCCCCc > 1:2633507/1‑149 GCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCG > 1:5483286/1‑150 GCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCCCCCCCCCACCCACCCCCACGTCACCGCCCc > 1:1392858/1‑149 TCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCACCCGCCACCCAACCCCCCCCAACGGCACCGCCCGCc > 2:5132334/1‑149 TCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCCACCCACCCCCACGTCACCGCCCGCA > 1:3396793/1‑150 TCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAAACCACCCCAACGTCACCGCCCGCA > 2:2304918/1‑150 CCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAA > 2:4322666/1‑150 CCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCCACCCACCCCAACGTCACCCCCCGCAAC > 1:601445/1‑150 ACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCCCCCCCCCCCCCCCCACCGCACCCCCCGCccccc > 1:2399895/1‑145 GTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGG < 2:4799187/150‑1 GTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGG < 2:1400350/150‑1 GTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGG < 2:1401276/150‑1 GTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCA < 1:5157327/107‑1 GTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCA > 2:5157327/1‑107 TCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCACATGGC > 2:4644117/1‑150 GCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCA < 1:1357907/150‑1 CGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCcc > 1:1155146/1‑148 GATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCCACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACT > 2:3211028/1‑150 GATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCCCAACCCAAGGTTGCCCAACCCGCTCATGGCCACT > 1:4772600/1‑150 GATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACT < 2:4279808/150‑1 GATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGGCACCGCCCGCCACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCCCT > 1:1323015/1‑150 ATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTG < 1:1951771/150‑1 ATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTG < 1:2002479/150‑1 ACGTTGGGGTGGGTTGGGTGGCGGTTGCAGCAGAGAGACCTGTGGTGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/661673‑661518‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcgaTGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTG > NC_002947/661599‑661747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |