| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 699806 | 0 (0.000) | 5 (0.020) | 3/262 | NT | 100% | intergenic (+196/‑48) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| ? | NC_002947 | = 1332182 | 0 (0.000) | intergenic (+203/‑90) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA | |||||
AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCGGCGAATGTCGTCTTCACAGTATAACCAGATTGCTTGGGGTTATATGGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATAAGCTTTGGGGAGTCGGCAAACAGACTGT > NC_002947/699657‑699954 | aGCTCGACTGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTT < 2:2883538‑M1/150‑1 (MQ=255)aGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTT > 1:2293832‑M1/1‑150 (MQ=255)aGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTT > 1:2293906‑M1/1‑150 (MQ=255) gCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTc < 2:4027767/150‑1 (MQ=14) gCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTc > 1:2982014/1‑150 (MQ=14) gCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTc > 2:3392496/1‑150 (MQ=31) gCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTc > 2:4117285/1‑150 (MQ=31) gCTCGAATGGTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTTGTGGATCAGGCTAAGGTAAAATTTGTTAGTTCAGCTCGAAAGAGCAAAGTACGAAGTTTc > 2:126850/1‑150 (MQ=11) cTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTAGGAATTTTCg > 2:3891203/1‑150 (MQ=11) cTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCg < 1:5566799/150‑1 (MQ=11) cTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCg > 1:1516146/1‑150 (MQ=11) cTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCg < 1:2374753/150‑1 (MQ=11) cTCGAATGTTGATTTCTGGCTTGTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCg < 2:2133885/150‑1 (MQ=11) gCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaaca > 1:4018297‑M1/1‑50 (MQ=255) cTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacat > 1:4028876‑M1/1‑49 (MQ=255) cTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacat > 2:3747280‑M1/1‑49 (MQ=255) aaaaTTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgagct > 1:3871446‑M1/1‑42 (MQ=255) aTTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaa > 1:5200988‑M1/1‑39 (MQ=255) caatTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacctctccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgaccaggaaaaacg > 1:3263941‑M1/2‑7 (MQ=255) aTTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgaccaggaaaaacgtc < 2:4872001‑M1/150‑146 (MQ=255) aTTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatacgaatgctcatttccaggttctgaccaggaaaaacgtc < 2:1677010‑M1/150‑146 (MQ=255) ttttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgaccaggaaaaacgtct > 1:4058501‑M1/1‑4 (MQ=255) ttttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgaccaggaaaaacgtct > 2:4518351‑M1/1‑4 (MQ=255) ttttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgaccaggaaaaacgtct > 2:698582‑M1/1‑4 (MQ=255) ttttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatacgaatgctcatttccaggttctgaccaggaaaaacgtct < 2:5083179‑M1/150‑147 (MQ=255) ttttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatacgaatgctcatttccaggttctgaccaggaaaaacgtct < 2:5498130‑M1/150‑147 (MQ=255) tttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatacgaatgctcatttccaggttctgaccaggaaaaacgtctt < 2:1239831‑M1/150‑148 (MQ=255) tttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatacgaatgctcatttccaggttctgaccaggaaaaacgtctt < 2:5282564‑M1/150‑148 (MQ=255) ttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgaccaggaaaaacgtcttc < 2:3342293‑M1/150‑149 (MQ=255) ttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgaccaggaaaaacgtcttc < 1:5246032‑M1/150‑149 (MQ=255) ttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgaccaggaaaaacgtcttc < 1:2761310‑M1/150‑149 (MQ=255) ttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatacgaatgctcatttccaggttctgaccaggaaaaacgtcttc < 2:1593686‑M1/150‑149 (MQ=255) ttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatacgaatgctcatttccaggttctgaccaggaaaaacgtcttc < 2:4214411‑M1/150‑149 (MQ=255) ttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatacgaatgctcatttccaggttctgaccaggaaaaacgtcttc < 2:5490655‑M1/150‑149 (MQ=255) ttaccttagccagatccaccagcagtgaaactggtgtacagtctatatctatcacatatcccaatttataaacaaccatctcacaaaacccagaaatcaacattcgatacgaatgctcatttccaggttctgaccaggaaaaacgtcttc < 2:4478900‑M1/150‑149 (MQ=255) | AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCGGCGAATGTCGTCTTCACAGTATAACCAGATTGCTTGGGGTTATATGGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATAAGCTTTGGGGAGTCGGCAAACAGACTGT > NC_002947/699657‑699954 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |