New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1825976	0 (0.000)	5 (0.020)	4/264	NT	100%	coding (748/1422 nt)	PP_1624	group II intron‑encoding maturase
	?	NC_002947	= 2075325	NA (NA)					coding (707/1422 nt)	PP_1846	group II intron‑encoding maturase

CACGGCAGGAGGGGACGCCGCAAGGCGGC‑‑CCGCTCTCGCCGTTGCTGTCGAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGA  >  NC_002947/1825935‑1826125                                            |                                                                                                                                                      cACGGCAGGAGGGGACGCCGCAAGGCGGCGTCCCCTCCTGCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcactggtctttgatccgacgttcgatgcaggccatgaggatgt                                             >  2:696231‑M1/1‑44 (MQ=255)         gaggGGACGCCGCAAGGCGGC‑‑CC‑CTCCTGCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacc                                  >  2:4207089‑M1/1‑33 (MQ=255)             ggACGCCGCAAGGCGGC‑‑CC‑CTCCTGCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgat                              >  2:2172876‑M1/1‑29 (MQ=255)              gACGCCGCAAGGCGGC‑‑CC‑CTCCTGCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtcgcggcgaataagcctgagtacgcacttgtctttgatccgacggtcgatgcaggccaggaggctgtcgggattgacccgagc                             >  2:4690301‑M1/1‑28 (MQ=255)              gACGCCGCAAGGCGGC‑‑CC‑CTCCTGCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatc                             >  2:2272792‑M1/1‑28 (MQ=255)                                         ccGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttc     <  2:4975873‑M1/150‑147 (MQ=255)                                         ccGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttc     >  1:1070124‑M1/1‑4 (MQ=255)                                         ccGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcga         >  1:297872‑M1/1‑4 (MQ=255)                                         ccGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcga         <  2:297872‑M1/146‑143 (MQ=255)                                          cGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcc    <  1:4666922‑M1/150‑148 (MQ=255)                                          cGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcc    <  2:2376306‑M1/150‑148 (MQ=255)                                          cGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcc    <  2:3931986‑M1/150‑148 (MQ=255)                                           gTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcca   <  1:4070422‑M1/150‑149 (MQ=255)                                           gTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcca   <  1:4070506‑M1/150‑149 (MQ=255)                                           gTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcca   >  1:4617824‑M1/1‑2 (MQ=255)                                           gTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcca   <  2:5450343‑M1/150‑149 (MQ=255)                                           gTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcca   >  2:1294763‑M1/1‑2 (MQ=255)                                           gTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcca   <  1:1946091‑M1/150‑149 (MQ=255)                                            tgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttccac  <  2:2126261‑M1/150‑150 (MQ=255)                                            tgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttccac  <  1:630249‑M1/150‑150 (MQ=255)                                            tgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttccac  <  1:5402077‑M1/150‑150 (MQ=255)                                            tgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttccac  >  1:1929929‑M1/1‑1 (MQ=255)                                            |                                                                                                                                                      CACGGCAGGAGGGGACGCCGCAAGGCGGC‑‑CCGCTCTCGCCGTTGCTGTCGAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGA  >  NC_002947/1825935‑1826125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.