New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 205102 = | 69 (0.290) | 11 (0.050) | 7/262 | NT | 14.3% | coding (10608/26049 nt) | PP_0168 | putative surface adhesion protein |
? | NC_002947 | 209747 = | NA (NA) | coding (15253/26049 nt) | PP_0168 | putative surface adhesion protein |
GCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACTGTGCCGGCCAACGGCACCGTGGGCACT > NC_002947/209612‑209767 | gttttgtcgagtgtcagttgctcgaacttaccgacgtccgcacctccaacggttgcgatcgacatcacgacagggtcgttggtgccgacgtagacgttgtccggggcagtgacggtagcagtgccCACGGTGCCGGCCAACGGCACCGTg < 1:109433‑M2/25‑1 (MQ=255) gttttgtcgagtgtcagttgctcgaacttaccgacgtccgcacctccaacggttgcgatcgacatcacgacagggtcgttggtgccgacgtagacgttgtccggggcagtgacggtagcagtgccCACGGTGCCGGCCAACGGCACCGTg < 1:3039487‑M2/25‑1 (MQ=255) gttttgtcgagtgtcagttgctcgaacttaccgacgtccgcacctccaacggttgcgatcgacatcacgacagggtcgttggtgccgacgtagacgttgtccggggcagtgacggtagcagtgccCACCGTGCCGGCCAACGGCACCGTg < 2:2941839‑M2/25‑1 (MQ=255) tttgtcgagtgtcagttgctcgaacttaccgacgtccgcacctccaacggttgcgatcgacatcacgacagggtcgttggtgccgacgtagacgttgtccggggcagtgacggtagcagtgccCACCGTGCCGGCCAACGGCACCGTggg < 1:3336617‑M2/27‑1 (MQ=255) gtcgagtgtcagttgctcgaacttaccgacgtccgcacctccaacggttgcgatcgacatcacgacagggtcgttggtgccgacgtagacgttgtccggggcagtgacggtagcagtgccCACCGTGCCGGCCAACGGCACCGTGGGCAc < 1:1904443‑M2/30‑1 (MQ=255) tcgagtgtcagttgctcgaacttaccgacgtccgcacctccaacggttgcgatcgacatcacgacagggtcgttggtgccgacgtagacgttgtccggggcagtgacggtagcagtgccCACCGTGCCGGCCAACGGCACCGTGGGCACt < 1:2089257‑M2/31‑1 (MQ=255) | GCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACTGTGCCGGCCAACGGCACCGTGGGCACT > NC_002947/209612‑209767 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |