| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,934,792 | A→C | 13.6% | intergenic (+22/+16) | PP_3464 → / ← PP_5603 | hypothetical protein/FAD dependent oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,934,792 | 0 | A | C | 13.6% | 308.5 / 32.4 | 131 | intergenic (+22/+16) | PP_3464/PP_5603 | hypothetical protein/FAD dependent oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (84/25); new base C (2/17); total (86/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.38e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
Only 100 of 147 total aligned reads displayed.
ACCACCTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGGCGCCAGTTCCACCCCCT > NC_002947/3934643‑3934938 | accaccTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGaa < 1:594400/150‑1 (MQ=255)accaccTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGaa < 1:3406497/150‑1 (MQ=255) ccaccTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAag > 1:2047203/1‑150 (MQ=255) ccaccTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAag < 2:396340/150‑1 (MQ=255) caccTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAagc < 1:4204544/150‑1 (MQ=255) caccTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCCGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAcgc > 2:5486153/1‑150 (MQ=255) accTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAagca < 1:4070907/150‑1 (MQ=255) accTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAagca < 2:1485952/150‑1 (MQ=255) accTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAagca < 2:1772139/150‑1 (MQ=255) accTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAagca < 2:2718397/150‑1 (MQ=255) accTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAagca < 2:3639056/150‑1 (MQ=255) ccTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAagcag > 2:5010117/1‑150 (MQ=255) tgctgATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGcc > 2:4118775/1‑150 (MQ=255) gctgATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGccc > 2:84452/1‑150 (MQ=255) ctgATCCGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGGTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGTT‑TGTCGGGTCCTTTTTCTGATCCGACATCCTGGGGCT‑GCTTCGCAGcccc < 1:3931060/150‑1 (MQ=255) ctgATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCTTCGCAGcccc < 2:2884696/150‑1 (MQ=255) ctgATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCTTCGCAGcccc < 1:3931122/150‑1 (MQ=255) taTCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGTCCAA‑TAGTTGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCTTCGCAGccccag < 2:3197151/149‑3 (MQ=255) gATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCATTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGTATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCTTCGCAGccccag < 2:1422134/150‑3 (MQ=255) gATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCTTCGCAGccccag < 2:2268758/150‑3 (MQ=255) gATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCTTCGCAGccccag < 2:1252171/150‑3 (MQ=255) gATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCCGGGGCT‑GCTTCGCAGccccag < 1:4572114/150‑3 (MQ=255) gATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGCCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCTTCGCAGccccag < 2:3196946/150‑3 (MQ=255) ccGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAAtctc > 1:224291/1‑150 (MQ=255) ggtgttGGGTTTCTACCCGCCGGAGCGCTGTGCGGCCAA‑TTGTGGTACGCTGGTGGGTGGGCGGTATACGGGGACTTACCCGCAATTGTT‑TGTCGGGACGTTTTTCTGAGCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCaa < 2:4152595/150‑1 (MQ=255) tCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTg > 1:340080/1‑150 (MQ=255) cTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGc > 1:1881131/1‑150 (MQ=255) tACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCt > 1:961369/1‑150 (MQ=255) tACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCt > 1:7825/1‑150 (MQ=255) tACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCt > 2:3749816/1‑150 (MQ=255) cacgCCGGAGGGCTGGGGGGCCAA‑TTGTGGTCCGCTGGTGGGGGGGGGGTATCCGGGTACTTCCGTGAAATTTTT‑TGTGGGGAGCTTTTTCTTTTCCGAAAGCTTGGGGCT‑GCTAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTcc < 2:1677796/147‑1 (MQ=255) cAAGCCGGAGCGCAGTACGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTcc > 1:4169705/1‑150 (MQ=255) cgggcgcgcAGTG‑GGCCAATTGGTGGTCCCCTGGGGGGTGGGCGGTAT‑CCGGGTATTAACATCCATTGTTGTGTGGGGACCTTTTTCTGACCCTACATCCTGGGGCT‑GCTACGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCa < 2:5306697/145‑1 (MQ=255) ccGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCa > 2:1838767/1‑150 (MQ=255) gcgcAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCAc > 2:4255651/1‑150 (MQ=255) cAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCAccgc > 2:919481/1‑150 (MQ=255) gTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCAccgccg > 2:5078090/1‑150 (MQ=255) gCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGc > 2:3151712/1‑150 (MQ=255) ttgTGGTACGCCGGGGGGTGGGCGGTATCCGGGTACTTACCTGCATTTGAT‑GGTCGGGACATTTTTCTGACCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGctcctc < 2:4928173/148‑1 (MQ=255) tgTGGTCCGCTGGTGGGTGGGCGGGACACCGGGACTGACCTGCAATTGTT‑TGTCGGGACGTTGTTGTGATCGGACATCCTGGGGCT‑GCGATGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCctct < 2:5107029/149‑1 (MQ=255) gtgtTACGCGGGGGGGGGGGCGGTTTCCCGGGACTTACCGGCAATTGAT‑GGTCGGGACCTTTTTCTGATCCGAAATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTctg < 2:3637909/150‑1 (MQ=255) gggTACGCTGCTGGGTGGGGGGGATACCGGCCCTTCCCGGCAATTGCG‑TGTCGGGACCTTTTTCGGACCCGACATCCTGGGGCG‑GCCACGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTctgc < 2:2636846/149‑1 (MQ=255) aCGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGtt > 1:543885/1‑150 (MQ=255) gtggggtgggCTGTATACCGTTACATCACTGAATTTTTT‑GGTCGGTACTTTTTTTTTAACCTACATCCTGGGGGT‑GGTAATCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCATCCACCGCCGCACGCTCCTCTGCTGTTCAccc < 2:1233824/147‑1 (MQ=255) ggtggtggggCGTGATCCGGGTACTAACCGGCATTTTTT‑TGTCGGTACCTTTTTCTTAACCCAATCCCTGGGGCT‑GCGAAGCACCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCAccc < 2:563886/143‑1 (MQ=255) ggtgggCGGTATACGGGGAATTACCTGCAATTGAT‑TTTCGGGACCTTTTTCTGAACCTACTTCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCaa < 2:3922148/150‑1 (MQ=255) gtgggtaTACCGGGAGTTACCGGCAATTGAT‑TGGGGGGACATTTTTCTGAGCCGAAATCCGGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGccc < 2:3366063/144‑1 (MQ=255) ggCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGccc > 2:1567757/1‑150 (MQ=255) gggATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACTTCCTGGGGCT‑GCGATGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGa < 2:4688200/150‑1 (MQ=255) cGGGACTTACCTGCAATTGAT‑TGTCGGGACC‑TTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCg > 1:2020298/1‑150 (MQ=255) aCTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCt > 2:2141547/1‑150 (MQ=255) ttACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCa > 1:5266320/1‑150 (MQ=255) ttACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCa > 1:2757934/1‑150 (MQ=255) ttACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCa > 1:4938230/1‑150 (MQ=255) tACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCaa > 1:2523623/1‑150 (MQ=255) aCCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAAc > 2:3773184/1‑150 (MQ=255) ccTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACa > 2:759989/1‑150 (MQ=255) cTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAg > 1:357028/1‑150 (MQ=255) tGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAgg > 1:4955686/1‑150 (MQ=255) tGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAgg > 2:909351/1‑150 (MQ=255) tGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAgg > 2:564878/1‑150 (MQ=255) tGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAgg > 1:4799392/1‑150 (MQ=255) cAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGgcc > 1:1388582/1‑150 (MQ=255) cAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGgcc > 2:5599666/1‑150 (MQ=255) aaTTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGgccg > 1:247516/1‑150 (MQ=255) aaTTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGgccg > 1:3600577/1‑150 (MQ=255) gat‑tgTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCa > 1:3310227/1‑150 (MQ=255) t‑tgTGGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCTCCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACt > 2:1909918/1‑150 (MQ=255) tCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCg > 1:1810289/1‑150 (MQ=255) tCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCg > 1:2263249/1‑150 (MQ=255) tCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACAAACCCCTGCTCCCACAGCCACCGCCGCACGCTCCACTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACAGCg > 2:3103333/1‑150 (MQ=255) ggggACCTTTTTCTGATCCGACTTCGTGGGGCT‑GCTACGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGt < 2:2014315/149‑1 (MQ=255) gggACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTa > 1:1274298/1‑150 (MQ=255) ggACCTTTTTCTTATCCTACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTAt < 2:4722981/150‑1 (MQ=255) ggACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTAt > 1:2934838/1‑150 (MQ=255) ggACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTAt > 1:2673300/1‑150 (MQ=255) acttttttCTTTTCCGA‑ATTGTGGGGGTGGCGACGCACCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTAttt < 1:4358783/147‑1 (MQ=255) aCCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTAttt > 2:260035/1‑150 (MQ=255) cTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGt < 2:2763025/150‑1 (MQ=255) tttCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGc > 1:1359515/1‑150 (MQ=255) tttCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGc > 1:1472404/1‑150 (MQ=255) tttCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGc > 1:4594897/1‑150 (MQ=255) tCTGATCCGAAATCGTGGGGCT‑GCTAAGCCGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGcac < 1:3179321/150‑1 (MQ=255) cTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGcacc > 2:4615050/1‑150 (MQ=255) gATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGcaccac < 2:4169705/150‑1 (MQ=255) aTCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCaccacc > 1:1195155/1‑150 (MQ=255) cGACATCCTGGGGCT‑GCTAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGgc < 2:1009323/150‑1 (MQ=255) cGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGgc > 1:2033329/1‑150 (MQ=255) tCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCGCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGGCGCCAg > 1:3280471/1‑150 (MQ=255) ccTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGGCGCCAGt > 1:5318313/1‑150 (MQ=255) ccTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGGCGCCAGt > 1:3082437/1‑150 (MQ=255) ggggCT‑GCTTCGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGGCGCCAGTTcc > 2:1735428/1‑150 (MQ=255) gggCT‑GCTTCGCAGCCCCAGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGGCGCCAGTTCCa > 2:3295288/1‑150 (MQ=255) ggCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTc > 1:211508/1‑128 (MQ=255) ggCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGGCGCCAGTTCCAc > 1:4201406/1‑150 (MQ=255) t‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGGCGCCAGTTCCAcccc > 2:5492674/1‑150 (MQ=255) gCGAAGCAGCCCCGGCAATATCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGGCGCCAGTTCCAccccc < 1:5119400/150‑1 (MQ=255) cGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGGCGCCAGTTCCACCCCCt > 2:4205826/1‑150 (MQ=255) aaGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGGCGCCAg > 2:4090218/1‑137 (MQ=255) aaGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGGCGCCAg < 1:4090218/137‑1 (MQ=255) | ACCACCTGCTGATCAGCCCGGTGGTTGGTTTCTACAAGCCGGAGCGCAGTGCGGCCAA‑TAGTGGTACGCAGCTGGGTGGGCGGGATACCGGGACTTACCTGCAATTGAT‑TGTCGGGACCTTTTTCTGATCCGACATCCTGGGGCT‑GCGAAGCAGCCCCGGCAATCTCAAACCAACCCCTGCTCCCCCAGCCACCGCCGCACGCTCCTCTGCTGTTCACCCGCAAGCCCCGACAATACCGCCTCAACAGGCCGCCCACTGCGTATTTGTCGCACCACCGGCGCCAGTTCCACCCCCT > NC_002947/3934643‑3934938 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |