Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 335,435 C→T 5.2% intergenic (‑38/+166) PP_0277 ← / ← PP_5437 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947335,4350CT 5.2% 804.7 / 20.1 251intergenic (‑38/+166)PP_0277/PP_5437hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (112/126);  new base T (11/2);  total (123/128)
Fisher's exact test for biased strand distribution p-value = 9.59e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01

Only 100 of 260 total aligned reads displayed.

TGCCGGGGTGGTTCCAGCCCAGGTTGCTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGG  >  NC_002947/335286‑335584
                                                                                                                                                     |                                                                                                                                                     
   cGGGGTGGTTCCAGCCCAGGTTGCTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAAc                                                                                                                                                    >  2:3816422/1‑150 (MQ=255)
     gggTGGTTCCAGCCCAGGTTGCTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGc                                                                                                                                                  <  1:1786522/150‑1 (MQ=255)
         ggtTCCAGCCCAGGTTGCTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGa                                                                                                                                              <  2:1607131/150‑1 (MQ=255)
          gtTCCAGCCCAGGTTGCTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGaa                                                                                                                                             <  2:138370/150‑1 (MQ=255)
          gtTCCAGCCCAGGTTGCTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGaa                                                                                                                                             <  1:2412030/150‑1 (MQ=255)
           ttCCAGCCCAGGTTGCTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGTTGCGCCAGaac                                                                                                                                            <  2:227527/150‑2 (MQ=255)
             ccAGCCCAGGTTGCTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGt                                                                                                                                          <  1:699084/150‑1 (MQ=255)
                gCCCAGGTTGCTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTcgc                                                                                                                                       <  2:3311825/150‑1 (MQ=255)
                 cccAGGTTGCTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTcgcg                                                                                                                                      >  2:4389554/1‑150 (MQ=255)
                  ccAGGTTGCTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCgg                                                                                                                                     >  1:3819981/1‑150 (MQ=255)
                      gTTGCTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCt                                                                                                                                 >  1:5199781/1‑150 (MQ=255)
                          cTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCg                                                                                                                             <  1:1064913/150‑1 (MQ=255)
                           tGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCgg                                                                                                                            <  2:786597/150‑1 (MQ=255)
                           tGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCgg                                                                                                                            >  1:2485658/1‑150 (MQ=255)
                            gTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCggg                                                                                                                           >  1:5579932/1‑150 (MQ=255)
                               ggggtggggCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGgggcgggcgggccg                                                                                                                        >  2:1944836/1‑148 (MQ=255)
                                gggtggggCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAgc                                                                                                                       >  1:1724323/1‑150 (MQ=255)
                                gggtggggCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAgc                                                                                                                       <  2:2583406/150‑1 (MQ=255)
                                 ggtggggCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCCTTGTCGGTGCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAgcg                                                                                                                      >  2:239624/1‑150 (MQ=255)
                                       gCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGCAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCCGGGTCGGGTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCCGCGCGCGAc                                                                                                                >  2:541299/1‑150 (MQ=255)
                                            gTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGCCGTCag                                                                                                           >  2:3040396/1‑149 (MQ=255)
                                            gTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCAc                                                                                                           >  1:1269145/1‑150 (MQ=255)
                                                 gccgGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACttttt                                                                                                      <  2:2973794/150‑1 (MQ=255)
                                                 gccgGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCAGTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACttttt                                                                                                      >  2:4715772/1‑150 (MQ=255)
                                                   cgGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTTGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTaa                                                                                                    <  2:3993975/150‑1 (MQ=255)
                                                   cgGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTaa                                                                                                    <  1:5411996/150‑1 (MQ=255)
                                                      cgcAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGa                                                                                                 <  1:505521/150‑1 (MQ=255)
                                                        cAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGAtt                                                                                               <  2:611343/150‑1 (MQ=255)
                                                         aGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGAttt                                                                                              >  1:4448498/1‑150 (MQ=255)
                                                         aGCCGGTCAGGGCCAGGGCCAAGGTCAACAGGGCGAGGGGGTAGGCTCGGGACACGATGCTCAGGTCCGGTGGTCCATTGTCGGATCTGGCCCAACGCCAGAAGTTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGAttt                                                                                              >  2:5471803/1‑150 (MQ=255)
                                                          gCCGGTCCGGGCCAGGGCGAAGGTCTACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGTAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTg                                                                                             <  1:3551142/150‑1 (MQ=255)
                                                            cGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTggg                                                                                           <  2:4301158/150‑1 (MQ=255)
                                                               tCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTgggggg                                                                                        >  1:162349/1‑150 (MQ=255)
                                                                cagggccagggcGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTggggggg                                                                                       <  1:485536/150‑1 (MQ=255)
                                                                 agggccagggcGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGc                                                                                      >  1:183805/1‑150 (MQ=255)
                                                                 agggccagggcGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATGTGGGGGGGc                                                                                      >  1:856322/1‑150 (MQ=255)
                                                                 agggccagggcGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCAGTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCCGCGCGCGACGTCACTTTGTAATGAGTTGGGGGGGc                                                                                      >  2:3574439/1‑150 (MQ=255)
                                                                   ggccagggcGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCgg                                                                                    >  1:4017841/1‑150 (MQ=255)
                                                                   ggccagggcGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCgg                                                                                    >  1:1921305/1‑150 (MQ=255)
                                                                      cagggcGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCCGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGgatg                                                                                 >  2:380271/1‑150 (MQ=255)
                                                                      cagggcGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGgatg                                                                                 <  2:1724323/150‑1 (MQ=255)
                                                                       agggcGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGgatga                                                                                <  1:2057458/150‑1 (MQ=255)
                                                                       agggcGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGGTCTGGAGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCggagga                                                                                >  2:575285/1‑150 (MQ=255)
                                                                            gacggTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGGCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGAGTGGGGGGGGCGGATGATacac                                                                           >  2:1540615/4‑150 (MQ=255)
                                                                            gAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAAAGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACATTTTAATGATTTGGGGGGGCGGATGATaaac                                                                           >  1:665936/1‑150 (MQ=255)
                                                                                 tCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTg                                                                      <  2:5170132/150‑1 (MQ=255)
                                                                                   aaCAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCg                                                                    >  1:2662698/1‑150 (MQ=255)
                                                                                   aaCAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCg                                                                    >  1:348596/1‑150 (MQ=255)
                                                                                    aCAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCgg                                                                   <  2:4538944/150‑1 (MQ=255)
                                                                                    aCAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCgg                                                                   <  2:4396201/150‑1 (MQ=255)
                                                                                    aCAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCgg                                                                   <  2:1219694/150‑1 (MQ=255)
                                                                                    aCAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCgg                                                                   >  1:2339157/1‑150 (MQ=255)
                                                                                        ggCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACTTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGt                                                               <  1:4389554/150‑1 (MQ=255)
                                                                                         gCGTGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTg                                                              <  2:2064247/150‑1 (MQ=255)
                                                                                          cGAGGTGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCGGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTgg                                                             <  1:118072/150‑1 (MQ=255)
                                                                                           gtgggggTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGa                                                            <  2:5124294/148‑1 (MQ=255)
                                                                                           gAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGa                                                            >  1:556549/1‑150 (MQ=255)
                                                                                           gAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGa                                                            <  2:475554/150‑1 (MQ=255)
                                                                                             gggggTGGGCTCGGGTCCCGCTGCTCTGGTCCGGTGGTCGATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGTCGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGc                                                          <  1:5279451/150‑1 (MQ=255)
                                                                                               gggTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCgggg                                                                 >  2:895220/1‑141 (MQ=255)
                                                                                                 gTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTa                                                      <  1:5385215/150‑1 (MQ=255)
                                                                                                 gTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTa                                                      <  2:4854977/150‑1 (MQ=255)
                                                                                                   gggCTCGGGTCACGCTGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCGGGCGGGCAGCGCGCGACGTCACTTTTTACTGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGc                                                    <  2:4043316/149‑1 (MQ=255)
                                                                                                     gCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCt                                                  <  1:3304049/150‑1 (MQ=255)
                                                                                                      cTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTa                                                      >  2:3296661/1‑145 (MQ=255)
                                                                                                       tCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTtg                                                >  2:3066235/1‑150 (MQ=255)
                                                                                                       tCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCAGGCGGGCAGCGCGCGACGTCACTTTTTAAAGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTtg                                                >  2:3065887/1‑150 (MQ=255)
                                                                                                        cGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTtgt                                               <  2:1921305/150‑1 (MQ=255)
                                                                                                           gTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCCGCGCGCGACGTCACTTTTTAAGGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGtgtt                                            >  2:870545/1‑150 (MQ=255)
                                                                                                             cACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGGTTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGtgttgt                                          >  1:4174587/1‑150 (MQ=255)
                                                                                                             cACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGggttgt                                          >  1:3135561/1‑150 (MQ=255)
                                                                                                              aCGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTc                                         <  2:1101605/150‑1 (MQ=255)
                                                                                                              aCGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTc                                         >  1:5061370/1‑150 (MQ=255)
                                                                                                               cGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCt                                        <  1:2444086/150‑1 (MQ=255)
                                                                                                                gATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTggg                                                                                           <  1:5129375/98‑1 (MQ=255)
                                                                                                                gATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTg                                       >  1:3369453/1‑150 (MQ=255)
                                                                                                                     tCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATg                                  >  1:606038/1‑150 (MQ=255)
                                                                                                                         gTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCct                              <  2:4829927/150‑1 (MQ=255)
                                                                                                                                 gtCCATTGTCGGTTCTGGCGCAACGCCCGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTACTGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCgg                      <  1:2987131/150‑1 (MQ=255)
                                                                                                                                 gtCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCgg                      >  2:4954985/1‑150 (MQ=255)
                                                                                                                                 gtCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCgg                      <  2:5318529/150‑1 (MQ=255)
                                                                                                                                 gtCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCgg                      <  1:1466186/150‑1 (MQ=255)
                                                                                                                                 gtCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCCGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTATCCTTGTGTTGTCTGGTATGGCCTCTTCGCgg                      <  1:2852846/150‑1 (MQ=255)
                                                                                                                                  tCCATTGTCGGGTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCggg                     >  2:2750063/1‑150 (MQ=255)
                                                                                                                                   ccATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGt                    <  1:3252535/150‑1 (MQ=255)
                                                                                                                                    cATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCCGGCAGCGCGCGACGTCACTTTTTAATGATTTGCGGGGGCGGATGATACACCGTTTCGGGGGTGGAGCAGTAGCCTTTTGTTGTCTGGTATGGCCTCTTCGCGGGTg                   >  2:5076199/1‑150 (MQ=255)
                                                                                                                                    cATTGTCCGTTATGGAGCCACCCCGGAAGGTCGCCTGGCAGGCGGGCAGCGCGCGACGTCACTTTTACAGGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTACCCGTGGGGTGTCTGGTATGGCCTCTTCGCGGGTg                   >  2:3159328/1‑150 (MQ=255)
                                                                                                                                         tCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAAccc              >  1:1025541/1‑150 (MQ=255)
                                                                                                                                         gcGGTGCGGGCGCACCGCCAGAAGGTCGCGGGGCGGGCGGGCAGCGCGCGACGTCACTGTTTAAGGATGTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAAccc              <  2:2597982/149‑1 (MQ=255)
                                                                                                                                           ggTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGc            >  1:909838/1‑150 (MQ=255)
                                                                                                                                             ttCTGGCGTTGCGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTc          >  2:2113623/1‑150 (MQ=255)
                                                                                                                                             ttCTGGCGTTGCGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTc          >  1:5201445/1‑150 (MQ=255)
                                                                                                                                             ttCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTc          <  1:2656447/150‑1 (MQ=255)
                                                                                                                                             ttCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCGTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTc          >  2:4887085/1‑150 (MQ=255)
                                                                                                                                             gtCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTc          <  2:1868325/149‑1 (MQ=255)
                                                                                                                                              tCTGGCGCATCGCCAGAAGGTGGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTcc         <  1:4639444/150‑1 (MQ=255)
                                                                                                                                                  gcgcAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTGGCGGGGGTGGAGCATTAGCCGTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGACCCCGCTCCTaca     >  2:2235688/1‑150 (MQ=255)
                                                                                                                                                  gcgcAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATGTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTaca     >  1:2534606/1‑150 (MQ=255)
                                                                                                                                                    gcAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACg   >  2:2331487/1‑150 (MQ=255)
                                                                                                                                                     cAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACgg  <  1:4303964/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TGCCGGGGTGGTTCCAGCCCAGGTTGCTGTTGGGGTGGGGCGAGGTGCCGCCGGCGCAGCCGGTCAGGGCCAGGGCGAAGGTCAACAGGGCGAGGGGGTTGGCTCGGGTCACGATGCTCAGGTCCGGTGGTCCATTGTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGG  >  NC_002947/335286‑335584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: