| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 353,105 | T→G | 13.7% | intergenic (+69/+49) | hisF → / ← cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 353,105 | 0 | T | G | 13.7% | 377.4 / 9.2 | 164 | intergenic (+69/+49) | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| Reads supporting (aligned to +/- strand): ref base T (75/62); new base G (12/15); total (87/77) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 187 total aligned reads displayed.
CAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTT > NC_002947/352958‑353254 | caacATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑tgt > 2:1827331/4‑150 (MQ=255)cAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑tgt < 1:1789169/150‑1 (MQ=255)cAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑tgt < 2:204196/150‑1 (MQ=255)cAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCAACAG‑GTTTGCTGAGATCTC‑tgt > 2:2468446/1‑150 (MQ=255) aGCATCGTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑tgtg < 1:889928/150‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTgg < 1:3759239/150‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTgg < 2:1019313/150‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTgg < 1:1149655/150‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTgg < 1:494754/150‑1 (MQ=255) gCATCTTCCACGTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTgg < 2:5505328/150‑1 (MQ=255) cATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGGACCCCCCCGCCCCCAG‑GGTTGCGGTGTTCTC‑GGTggg > 1:1494652/1‑150 (MQ=255) ttCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCACCCACAG‑GTTTGCTGAGATATC‑GGTGGGAGCg > 1:3128673/1‑150 (MQ=255) tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCgg < 1:5493579/150‑1 (MQ=255) tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCgg > 1:5050979/1‑150 (MQ=255) cACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCGACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGc < 2:5284749/150‑1 (MQ=255) aCTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCg < 1:4024799/150‑1 (MQ=255) ggCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑GGTGGGAGCGGGCGTGccc < 1:2990297/150‑1 (MQ=255) gTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑TTTTGCTGAGATCTC‑TGTGGGAGCAGGCGTGCCCGCGaa < 2:590821/150‑1 (MQ=255) tACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCTGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCAGACAAAG‑GTTTTGTTTGATATT‑TGTGGGAGCGGGCGTTGCcgcgtcg > 1:4702563/1‑147 (MQ=37) tACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCGCCCACAG‑GTTTGCTGAGATCTA‑GGTGGGAGCGGGCGTGCCCCCGCAg > 1:1192178/1‑150 (MQ=39) cacaGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATACATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGc > 2:2913457/1‑140 (MQ=255) cacaGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATACATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGc > 2:2913605/1‑140 (MQ=255) cacaGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATACATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGc < 1:2913457/140‑1 (MQ=255) cacaGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATACATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGc < 1:2913605/140‑1 (MQ=255) acaGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGc > 2:4317620/1‑150 (MQ=255) acaGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GGTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGc > 2:4700467/1‑150 (MQ=255) cctGCCGGAGCCCAACGCCTCCAGCGCTTCCCGCGGGAACGCCGCTCCCGCACCCAGTGACCCGCGCCGCGTTGCAGCCCTACGCGGCCACGCCCGCACCCACAG‑GTTTGCTCAGAACTC‑GGGCGGACCGGGCGTGCCCGCGAAGGGCcg < 2:1680829/148‑1 (MQ=255) ccGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACCCCCCCGCCCCCCC‑GTGTTGTGGGGTCTC‑GGTGGGTGCGGGGGTGCCCGCGAAGGGCcgcgca > 1:3829185/1‑148 (MQ=255) cGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACCCCCCCGCCCACCC‑GGTTGGTGGGGTCGC‑GGTGGGAGCGGGCGGGCCCGCGAAGGGCCGCGAAg > 1:2541304/1‑150 (MQ=255) gCCGACATGGCGTCGCGCGGGATCGTCGTTCGCGGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAAtt < 2:4601328/150‑1 (MQ=255) tACATGGCTTCGCGCGGGATCGTCGTTCGCTGTTCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGGAGGCCCGCTCCCACAG‑GTTTTGTGTGGTATG‑TGTGGGAGCGGGCGTGGCCGCGGAGGGGCGCGAAGCGGCCCCAATTggt > 1:1722533/1‑148 (MQ=37) acttGGCTGCGCGCGGGATCGGCGTTCGCTGATCCTTTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACCG‑GTTGGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCtt < 2:28836/147‑1 (MQ=38) aCATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGGCCGCCCCCCCCCACAC‑GGTTGGGGAGATATA‑GGTGGGTGCGGGCGTGCCCCCCAAGGGCCGCCAAGCGGCCCCCAATGCtt > 1:1449299/1‑150 (MQ=255) ttCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGAGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGt > 2:1140676/1‑150 (MQ=255) ttCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCGTAGATCTC‑GGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGt > 2:1997857/1‑150 (MQ=255) ttCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCCCACCCACAG‑GGTTGCTGAGATATC‑TGGGGGAGCGGGCGTGCCCGCGCAGGGCCGCGAAGCGGCCCCAAATGCTTCaaacct > 1:3550962/1‑146 (MQ=38) cgcgcgGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTgg < 2:3758040/150‑1 (MQ=255) gcgcgGGATCGTCGTTCGCTGAAACATTGACCGGGGCTGCTTTGCAGACCTTAGCCGGCAACCACGCACCCACAG‑GTTTGCTGAGAACACATGT‑CGATCGCGCGTCACCGCGAACGTCCCCCAAGCGCCCCCAATTGCGTCAACAGTGGt > 2:2824418/1‑150 (MQ=255) gcgGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GGTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTc > 2:3243294/1‑150 (MQ=255) gggATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCtt < 2:4373033/150‑1 (MQ=255) gATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGc < 2:4255703/150‑1 (MQ=255) gATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGc < 2:1264911/150‑1 (MQ=255) ggggtTCGCTGATCCATGGCCCGGGGCTGGTTTGCAGCCCTGCGCGGGCCCGCCCGCCCCCACCG‑GTTGGGGCAGCTCTG‑TGGGGGAGGGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGag < 1:5213480/147‑1 (MQ=25) ttCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACCG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagcagc < 2:1754937/150‑1 (MQ=255) cGCTTACCCATGGCCCGGGGGTGCTTTGCCCCCCGTCGGGGGCCCGCCCGCCCCCACTG‑GTTGGCTGTGCGCGC‑GGGGGGCGCGGGCGGCCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAgcgc < 1:496528/150‑1 (MQ=255) cGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGTTCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAAATGCTTCCACCGGGGTTCGTGCCGAGCAgcgc > 2:4378571/1‑150 (MQ=38) gCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAAt < 2:4129411/118‑1 (MQ=255) cTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGt < 2:655323/150‑1 (MQ=255) ccATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACCCCCCCACCCACAG‑GTTTGCGGGGATCTC‑GGGGGGTGCGGGCGGGCCCGCGAAGGGCCGCGAAGCGGCCCCAAATGCTTCAACCGGGGGTCTTGCCGGGCAGCGCGTGGTaa > 2:1419314/1‑150 (MQ=37) gACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTGGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTc < 1:4194902/150‑1 (MQ=255) aCCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACCG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg < 2:887912/150‑1 (MQ=255) aCCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGCTCTC‑GGGGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg < 1:2294988/150‑1 (MQ=255) ggggCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCCCAG‑GGTTGCTGAGATCTC‑GGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCCATTGCGTCAACCGTGGTTCTTGCCGAGCCGCGCGTGGTGAAGCGCGGtt > 2:3999384/1‑149 (MQ=37) gggCTGCTTTGCAGCCCTTCGCGGGGACGCCCGCTCCCACAG‑GTTTGGTGTTTTGTG‑TGTGGGAGCGGGCGTGCCCGCGTAGGGGGGGGTAGCGGGCCCAATTGGTTGAAGCGTGGTTGTTGGCGGGGAGGGGGTGGTAAAGGTGGGttt > 2:1397441/1‑148 (MQ=16) ggCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACCG‑GTTTGCTGGGATCTC‑GGTGGGGGCGGGCGGGGCCGCGAAGGGCCGCGAAGCGGCCCCCAATGCTTCAACCGGGGGTCTTGCCGAGCAGCGCGTGGGAAAGCTCGGGATc > 1:2190211/1‑150 (MQ=37) tgctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGGTGTGTTGTG‑TGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTGTTGGCGAGGAGGGGGTGGTAAAGGTCGGTATcccc > 2:3310605/1‑150 (MQ=37) ggttGCCGCCCTTCGGGGGCACCCCCGCTCCCCCCG‑GTTGGCTGCGATCTG‑GGTGGGCGGGGGCGTCCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGa < 1:2478517/148‑1 (MQ=255) ctTTGCAGCCCTGCGCGGGCACGCCCGCTCCCCCCG‑TTCTCTCCCCAAACC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGa < 2:1943872/150‑1 (MQ=21) tttGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCCATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGGATCCCCGAg > 2:4911275/1‑150 (MQ=255) tttGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCGGAGATCTC‑TGGGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAg > 2:4878727/1‑150 (MQ=255) cAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATc < 2:1494652/150‑1 (MQ=255) gCCCTCCGCGGGCACGCCCGCTCCCACCG‑TTTTGCTGATATCTC‑GGTGGTAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATccc < 1:5297623/150‑1 (MQ=39) ccccTTCGCGGGCACGCCCGCTCCCACCG‑GTTTGCTGAGATCGC‑GGTGGGAGCGGGCGGGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATccc < 1:2095946/149‑1 (MQ=255) cccTTCGCGGGCACGCCCGCTCCCACAGAGATCGCAGCAAAACG‑TG‑GGGAGCGCGCGTGACCGCGAAGGGCCGCGAAGCGGCCCCAATTGCATCAACCGGGGTTCTTGCCGAGCAGCGCGGGGTAAAGCTCGGGATCCCCGAGTATcccc > 2:1346448/1‑150 (MQ=18) ttCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCccacc > 2:2648130/1‑150 (MQ=255) ttCGCGGGCACGCCCGCTCCCACAG‑GGTTGCTGCGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGGGGTACAGCTCGGTATCCCCGAGTATCCccacc > 2:4988946/1‑150 (MQ=255) cACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTc > 2:2242414/1‑150 (MQ=255) cccGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTa > 1:1338966/1‑150 (MQ=255) ccGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGGATCCCCACCACCCTGTCGTTAt > 1:1071069/1‑150 (MQ=255) cGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATc > 2:1441723/1‑150 (MQ=255) cGCACCCCCCG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATc < 1:1588072/150‑1 (MQ=255) gCTCCCCCCG‑GGTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATcc > 2:3802086/1‑150 (MQ=255) tCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGAAAAGCTCGGTATCCCCGAGTATCCCCACCACCCAGACGTTATCCTg > 2:1590646/1‑150 (MQ=255) ccACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATcc < 1:1274865/126‑1 (MQ=255) ccACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTaca < 1:2742838/150‑1 (MQ=255) cacaG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgcag > 2:1262267/1‑150 (MQ=255) cacaG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgcag > 1:986610/1‑150 (MQ=255) accg‑gTTTGCTGATATCTC‑TGTGGGCGGGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgcagc < 1:4317620/147‑1 (MQ=255) acaG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGa < 2:2791082/118‑1 (MQ=255) acaG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGa > 1:2791007/1‑118 (MQ=255) acaG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgcagc > 2:3450362/1‑150 (MQ=255) acaG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgcagc > 2:4019640/1‑150 (MQ=255) ttGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGc < 2:4527088/150‑1 (MQ=255) tGAGATCTG‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgt > 2:1095067/1‑150 (MQ=255) tGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgca < 2:1288441/138‑1 (MQ=255) tGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgt > 1:1464462/1‑150 (MQ=255) tGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgt > 1:5529811/1‑150 (MQ=255) tGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgt > 2:5140580/1‑150 (MQ=255) tGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgt > 2:4414195/1‑150 (MQ=255) gagaTCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgtt > 1:2639263/1‑150 (MQ=255) gagaTCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgtt < 1:2792836/150‑1 (MQ=255) tctc‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCg < 2:2322104/150‑1 (MQ=255) tc‑tGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGt > 1:1047049/1‑150 (MQ=255) tc‑tGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGt > 1:2802802/1‑150 (MQ=255) tc‑tGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGt > 2:3247022/1‑150 (MQ=255) c‑tGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGtt > 2:2515117/1‑150 (MQ=255) c‑tGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGtt < 2:2639263/150‑1 (MQ=255) tgtgGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGttt < 2:3620895/150‑1 (MQ=255) tgtgGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGttt > 2:800215/1‑150 (MQ=255) tgtgGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGttt > 1:585533/1‑150 (MQ=255) | CAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAG‑GTTTGCTGAGATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTT > NC_002947/352958‑353254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |