| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,901,393 | T→C | 8.8% | intergenic (+32/‑176) | PP_4304 → / → sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,901,393 | 0 | T | C | 8.8% | 556.2 / 30.5 | 196 | intergenic (+32/‑176) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (72/103); new base C (10/7); total (85/111) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.96e-01 | |||||||||||
Only 100 of 218 total aligned reads displayed.
CAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCA > NC_002947/4901244‑4901542 | cAATGCCATGCGTGGGGAGCCGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAt > 2:3754685/1‑150 (MQ=255) gCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGc < 1:1216588/150‑1 (MQ=255) cATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTc < 2:697696/150‑1 (MQ=255) agcagcTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGcgcg < 2:4551075/150‑1 (MQ=255) cagcTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGa < 1:1548375/150‑1 (MQ=255) agcTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGAc < 2:3344915/150‑1 (MQ=255) agcTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCGCCTGT‑AGGAGCGGat < 2:1576912/150‑2 (MQ=255) gcagcaTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTg < 2:700267/150‑1 (MQ=255) cagcaTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTgc < 2:545281/150‑1 (MQ=255) gcaTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTgcgc < 1:4429661/150‑1 (MQ=255) caTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGGCGCATGGCGGGTGAATCCGCGCCGAC‑AGGCGCGGACCGGGcgcg > 1:1446989/1‑150 (MQ=255) caTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGcgcg < 2:4126091/150‑1 (MQ=255) gATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCt > 2:2644313/1‑124 (MQ=255) gATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTc < 2:3569456/150‑1 (MQ=255) gATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTc < 2:2544032/150‑1 (MQ=255) cttgaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTcc‑‑‑cc > 2:3267893‑M1/95‑150 (MQ=255) gCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCTTGCGCGGTcc‑‑‑ccc < 2:2820034/150‑1 (MQ=255) gCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTcc‑‑‑ccc < 2:4715657/150‑1 (MQ=255) cccGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCg > 2:5289230/1‑150 (MQ=255) cccGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCg < 1:2410627/150‑1 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCTCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTa < 1:4098230/150‑1 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTa < 1:3316948/150‑1 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTa < 1:2153502/150‑1 (MQ=255) aagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTa > 1:942572‑M1/91‑150 (MQ=255) aagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttccgcctgcGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTa > 1:5471240‑M1/91‑150 (MQ=255) ggtgttggggcagattgccagctactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGa > 2:3417721‑M1/88‑150 (MQ=255) ggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttccgcctgcGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGa > 1:3263481‑M1/88‑150 (MQ=255) ccTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGa < 1:2125727/150‑1 (MQ=255) ccTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGa < 1:5435490/150‑1 (MQ=255) gttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTcc‑‑‑c > 1:3909073‑M1/85‑139 (MQ=255) ttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg > 1:4272084‑M1/84‑150 (MQ=255) ttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg > 1:1751165‑M1/84‑150 (MQ=255) gtggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg > 1:2428963‑M1/84‑150 (MQ=255) ccACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTgcg < 1:26384/131‑1 (MQ=255) ccACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg < 2:1036332/150‑1 (MQ=255) ccACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg < 1:3675170/150‑1 (MQ=255) ccACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCATGCGCGGTCC‑‑‑CCCGTAGGAGCgg < 2:2483579/150‑1 (MQ=255) ggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGt > 2:5621611‑M1/82‑150 (MQ=255) acaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTCGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATACGCTCCTAA‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGt < 2:3934838‑M2/150‑2 (MQ=255) gggcagattgccagcgactataacgggtggggttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgcGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtt > 2:1448284‑M1/81‑150 (MQ=255) caAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg < 2:2410518/147‑1 (MQ=255) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttac > 2:1241079‑M2/1‑145 (MQ=255) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttac > 2:5356861‑M2/1‑145 (MQ=255) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑GGG‑‑‑GGACCGCGCACGGTCCGCGCCTGTAGGAGCGGAtttac > 1:5118224‑M2/1‑145 (MQ=255) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑GGG‑‑‑GGACCGCGCACGGTCCGCGCCTGTAGGAGCGGAtttac > 2:1900120‑M2/1‑145 (MQ=255) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGCGTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCCGGCGCGGGCC‑‑‑CCCGGAGGAGCGGGtttac < 1:393964‑M2/150‑6 (MQ=255) agaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGGCC‑‑‑CCCGGAGGAGCGGGtttaccc > 2:5266905‑M2/1‑143 (MQ=255) aCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgc > 1:4750169‑M2/1‑141 (MQ=255) ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGCTTCGCGGGTAAATACGCGACTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgc < 2:61374‑M2/150‑12 (MQ=255) ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGCTTCGCGGGTAAAGACGCTCCTAC‑AGGCGCGGACCCGGCGCGGTCC‑‑‑CCCCGAGGAGCGGGtttaaccgcga < 1:2768695‑M2/150‑12 (MQ=255) cACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaa > 2:3545629‑M2/1‑138 (MQ=255) aCGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCGTCGCGGGTAAATACCCTCCTAC‑ACGCGCCGGCCCTGCGCGGTGC‑‑‑CCCGTGGGGGCGGGtttaaccccgaag < 2:1394378‑M2/150‑14 (MQ=255) cGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaaga > 2:3908094‑M2/1‑136 (MQ=255) aGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCACCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccg < 2:1642503‑M2/150‑20 (MQ=255) aGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGCTTAGCGGGTAAAAACCCACCAACAAGCCCCGGCCCGGGCCGGGGCC‑‑‑CCCG‑AGGAGCCGGGTTAACCCCCAAGAGGccc > 1:3504116/1‑149 (MQ=255) ggcgTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAgg < 2:3633964/150‑1 (MQ=255) ggtttctgttcgCGCTGTGGGATGGGGTTGTTTCCCATAGGGTGTTAGCGCCTGCGCCGGCCTCTTCGGGGGTAAATCCGCTCCTAC‑CGGGGGGGACCGTGCGCGGCCC‑‑‑CCCGTAGGTGCGGGTTTACCCGCGAAGAGGCCGGCACAGGc < 2:1497362/147‑1 (MQ=25) gttctCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCATCCCCGGGAAATCCCCACCAAC‑ACGCGCCGACCGGGCGCCGTCC‑‑‑CCCCGAGGAGCGGGTTTACCCCCGAAGAGGCCCGCACCGGCACAAGCa > 1:2293446/1‑150 (MQ=255) ttctCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCAt < 2:4232285/150‑1 (MQ=255) cTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCaa < 2:2797689/150‑1 (MQ=255) gAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCgcgca < 2:2348637/83‑2 (MQ=255) aaTGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGGGCGCGGTCC‑‑‑CCCGGAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCCGAAGCATAACCAAAGCAttt > 2:4312003/1‑150 (MQ=255) gggTTGTTTCCCAAAGCGTGATAGCGCCTGCGCGGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGTACGGTGCGCGGTCC‑‑‑CCCTTTGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCAtttttt < 2:2364286/150‑1 (MQ=38) ggTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTg < 2:4844493/150‑1 (MQ=255) ggTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCCCTCCTAC‑AGGCGCGGCCCGTGCGCGGGCC‑‑‑CCCCTAGGAGCGGGTTTACCCGCCAAGAGGCCGGCACAGGCAGAAGCATAAACAAAGCATTTTTTg > 1:5070762/1‑150 (MQ=38) gttgttTCCCAAAGCGTGATAGCGCCTGCGCCGGCCAATTCGCGGGTAAATACGCTACTAA‑AGGCGCGGACCCTGCGCGGTCC‑‑‑CCCCTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAAACAAAGCATTTTTTGt > 2:776701/1‑150 (MQ=38) tCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGGCC‑‑‑CCCGGAGGCGCGGGTTTACCCGCGAAGAGGCCGGCCCCGGCAGAAGCATAACCCAAGCATTTTTGGTTCTTTa > 2:3872170/1‑150 (MQ=38) ccAAAGCGTGATACCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGACC‑‑‑CCCGTAGGAGCGTTTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAc < 2:2079380/150‑1 (MQ=255) cAAAGCGTGATAGCGCCTGCGCCGGCCGCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGGAGGGGCGGGTTTTCCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTGTTTTAcc > 2:2949662/1‑150 (MQ=39) aaaGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAccc < 2:905698/150‑1 (MQ=255) gCGTGATAGCGCCTGCGCGGGCCTGTTCGGGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGta < 2:275223/150‑1 (MQ=255) gATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATaaa < 1:3754685/150‑1 (MQ=255) tGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttac < 2:2161661‑M2/76‑6 (MQ=255) cgcCGGCCTCTTCGGGGTTAAATCCGCCCCTAC‑CGGCGGGGACGGTGGGGGGCCC‑‑‑CCCGTCGGCGCGGTTTTCCCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTta < 1:2915096/150‑1 (MQ=255) CTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGACGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGc < 2:5145544‑M1/150‑1 (MQ=255) TCTTCGCGTTTAAATCCGCTCCTAC‑CGGCGCGGCCGGGGCGCGGTCC‑‑‑CCGTTAGGCGGGGTTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCt > 1:696308‑M1/1‑150 (MQ=255) TCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGc < 1:5236745‑M1/149‑1 (MQ=255) TCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGc > 2:5236745‑M1/1‑149 (MQ=255) TCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCt < 1:913926‑M1/150‑1 (MQ=255) TTCGCGGGTAAACCCGCTCCTAC‑GGG‑‑‑GGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTgg < 1:102031‑M1/150‑1 (MQ=255) TTCGCGGGTAAACCCGCTCCTAC‑GGG‑‑‑GGACCGCGCACGGTCC‑‑‑GCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTATTTGTTCTTTAACCCGTATAAACCCACCCGGTATAGTCGCAggcta < 2:407765‑M1/150‑3 (MQ=255) CGGGTAAACCCGCTCCTAC‑GGG‑‑‑GGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAAt < 2:4358658‑M1/150‑1 (MQ=255) GGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATc < 1:1559613‑M1/150‑1 (MQ=255) GGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCt < 1:3211262‑M1/150‑1 (MQ=255) AAATCCGCTCCTAC‑CGGCGCGGACGGTGCGCGGCCC‑‑‑CCCGTTGGTGGGGTTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGcc > 1:3356963‑M1/1‑150 (MQ=255) aaTCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcaaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttg < 1:4658208‑M2/150‑102 (MQ=255) AATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTCTAGTCGCTGGCACTCTGccc < 2:5017562‑M1/150‑1 (MQ=255) aTCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgt < 1:5521807‑M2/150‑103 (MQ=255) tCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaaggggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtg < 2:3613774‑M2/150‑104 (MQ=255) tCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattc < 2:2359450‑M2/103‑57 (MQ=255) tCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattc > 1:2359450‑M2/1‑47 (MQ=255) tCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAGCCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 1:3833705/1‑150 (MQ=255) tCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 1:4540227/1‑150 (MQ=255) tCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 1:4916142/1‑150 (MQ=255) tCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 1:372732/1‑150 (MQ=255) tCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:2540861/1‑150 (MQ=255) tCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:3661300/1‑150 (MQ=255) tCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:2636957/1‑150 (MQ=255) tCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTATACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCAATTTTTGATCTTTAACCCGTATAAACCCACCCGTAATAGTCGCTGGCAATCTGCCCCa > 2:3223496/1‑150 (MQ=255) tCCGCGCCTGT‑AGGAGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCATATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:5077666/1‑150 (MQ=38) | CAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAC‑AGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCA > NC_002947/4901244‑4901542 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |