| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,901,419 | G→A | 5.7% | intergenic (+58/‑150) | PP_4304 → / → sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,901,419 | 0 | G | A | 5.7% | 715.9 / 21.0 | 229 | intergenic (+58/‑150) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (110/105); new base A (4/9); total (115/114) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 | |||||||||||
Only 100 of 241 total aligned reads displayed.
GCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAA > NC_002947/4901271‑4901567 | gcaTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTgcgc < 1:4429661/150‑1 (MQ=255) gATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTc < 2:2543818/150‑1 (MQ=255) tGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGCGCACGGTccgc < 1:4202746/150‑3 (MQ=255) cttgaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTcc‑‑‑cc > 2:3267893‑M1/95‑150 (MQ=255) gtgaagggtgtgggggcagattgccagcgactacaccgggtgggtttatacgggttaaacaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAAC‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTcc‑‑‑ccc > 2:149350‑M1/94‑150 (MQ=255) gCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTcc‑‑‑ccc < 2:4715657/150‑1 (MQ=255) tgaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAAC‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCg > 1:3793189‑M1/93‑150 (MQ=255) ccGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGt < 2:265099/150‑1 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTa < 1:2153495/150‑1 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTa < 1:4098004/150‑1 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTa < 1:65972/150‑1 (MQ=255) aagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttccgcctgcGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTa > 1:5471240‑M1/91‑150 (MQ=255) tgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAAC‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGc > 2:2430608‑M1/86‑150 (MQ=255) gttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTcc‑‑‑c < 2:3909073‑M1/55‑1 (MQ=255) gttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTcc‑‑‑c > 1:3909073‑M1/85‑139 (MQ=255) ttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAAC‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg > 1:1751165‑M1/84‑150 (MQ=255) ttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAAC‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg > 2:5430303‑M1/84‑150 (MQ=255) ccACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTgcg < 1:26384/131‑1 (MQ=255) ccACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg < 2:1036332/150‑1 (MQ=255) ccACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg < 2:91710/150‑1 (MQ=255) ccACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCATGCGCGGTCC‑‑‑CCCGTAGGAGCgg < 2:2483579/150‑1 (MQ=255) cacaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCggg < 1:1334292/150‑1 (MQ=255) ggggcagattgccagcgactataccgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGt > 2:5621521‑M1/82‑150 (MQ=255) acaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGt > 2:1932340‑M2/1‑149 (MQ=255) caAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg > 1:2410518/1‑147 (MQ=255) caAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtt > 2:3558310‑M2/1‑148 (MQ=255) ggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGttt > 1:3044594‑M1/80‑150 (MQ=255) agaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGttta > 1:935274‑M2/1‑146 (MQ=255) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGGCGCGTCTCGGGTGAAT‑ACCCGCCGACAGGCGCGGCCCCGGCGCGGGCC‑‑‑CCCCGAGGGGCGGGgtttc > 1:3316856/1‑148 (MQ=255) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttac > 2:1241079‑M2/1‑145 (MQ=255) agaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttaccc > 2:1518654‑M2/1‑143 (MQ=255) agaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGGCC‑‑‑CCCGGAGGAGCGGGtttaccc > 2:5266905‑M2/1‑143 (MQ=255) aCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgc > 1:4750169‑M2/1‑141 (MQ=255) ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGCTTCGCGGGTAAAG‑ACGCTCCTACAGGCGCGGACCCGGCGCGGTCC‑‑‑CCCCGAGGAGCGGGtttaaccgcga < 1:2768695‑M2/150‑12 (MQ=255) ccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCTGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGaa > 1:3728324‑M1/71‑150 (MQ=255) cACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCATCGCGGGTAAAT‑CCGCTCCGACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaa < 1:3249290‑M2/150‑13 (MQ=255) aCGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCGTCGCGGGTAAAT‑ACCCTCCTACACGCGCCGGCCCTGCGCGGTGC‑‑‑CCCGTGGGGGCGGGtttaaccccgaag < 2:1394378‑M2/150‑14 (MQ=255) cGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaaga > 2:2876889‑M2/1‑136 (MQ=255) gAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCTTAGGAGCGGGtttacccgcgaagag > 1:4362503‑M2/1‑135 (MQ=255) gAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAC‑CCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCCTGTAGGAGCGGAtttacccgcgaagag > 1:5179891‑M2/1‑135 (MQ=255) aGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCACCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccg < 2:1642503‑M2/150‑20 (MQ=255) ggcgTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAgg < 2:3633964/150‑1 (MQ=255) tctgttctCGGTGTGGGAATGGGTTGTTTCCCAACGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGTTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGACGAGGCCGGCACAGGCAGaa < 2:3310152/150‑1 (MQ=255) tgttctCGCTGTGGGAATGGGTTGTTTCCCACAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGc < 2:388118/150‑1 (MQ=255) ttctCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTTAAT‑CCGCGCCTACAGGCGCGGACCGGGCGCGGTCC‑‑‑CCCGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCAt > 1:3722574/1‑150 (MQ=255) ttctCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCAt < 2:4232285/150‑1 (MQ=255) ttctCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCGTCGCGGGTAAAT‑CCGCGCCTACAGGCGCGGCCCGTCCGCGGTCC‑‑‑CCCGGAGGAGCGGGTTTTACCGCGACGCGGCCGGCACAGGCAGAAGCag > 2:3475896/1‑149 (MQ=255) tgtgGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCCGGTAAAT‑ACGCTCCTACCGGCGCGGACCGTGCGCGGGCC‑‑‑CCCCGAGGAGCGGGTTTACCCCCGACGGGGCCGGCCCAGGCCCAAGCAAAACCaaa > 2:2369917/1‑150 (MQ=255) aaTGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGGGCGCGGTCC‑‑‑CCCGGAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCCGAAGCATAACCAAAGCAttt > 2:4312003/1‑150 (MQ=255) gggTTGTGTCCCAACGCGTGATAGCGCCTGCGCCGGCCTCTTCGGGGGTAAAT‑CCGCTCCTACAGGCGCGGACGGTGCGCGGTCC‑‑‑CCCGTAGGAGGGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCAtttttt < 2:2364087/150‑1 (MQ=39) ggTTGTTTCCCAACGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTg < 2:3401664/150‑1 (MQ=255) ggTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCAACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAGAAGCATAAACAAAGCATTTTTTg > 1:5070987/1‑150 (MQ=255) gttgttTCCCAAAGCGTGATAGCGCCTGCGCCGGCCAATTCGCGGGTAAAT‑ACGCTACTAAAGGCGCGGACCCTGCGCGGTCC‑‑‑CCCCTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAAACAAAGCATTTTTTGt > 2:776701/1‑150 (MQ=38) cccaaGCGTGTTCGCGCCGGCCCCGGCCTCTGCGGGGGTAAAT‑CCGCTCCAACTGGCGCGGACGGTGGGCGGTCC‑‑‑CCGTTAGGAGCGGGTTTCCCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAc < 2:530059/147‑1 (MQ=37) ccAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAA‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCGTTAAc > 2:4089843/1‑150 (MQ=255) ccAAAGCGTGATAGCGCCTGCGCCGGCCTCGTCGCGGGGAAAT‑ACGCGCCAACAGGCGCGGGCCCGGCGCGGTCC‑‑‑CCCCTAGGAGCGGGTTTAACCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCCAAGCAATTTTTGTTCTTTAAc > 2:570898/1‑150 (MQ=255) ccAAAGCGTGATACCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGACC‑‑‑CCCGTAGGAGCGTTTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAc < 2:2079380/150‑1 (MQ=255) cAAAGCGTGATAGCGCCTGCGCCGGCCGCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGGAGGGGCGGGTTTTCCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTGTTTTAcc > 2:2949662/1‑150 (MQ=39) gATTGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTCCCGGCGCGGACCGTGCGCGGCCC‑‑‑CCCGTTGGAGGGGTTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATaaa < 2:1446989/150‑1 (MQ=255) cgcgTGCGCGGGCCTCTT‑GGGGGTAAATCCCGCCCCTACCGGCGGGGACGGTGCGGGGCCC‑‑‑CCCGTCGGAGGGTTTTTACCCGCTAAGCGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAacccac < 1:2414019/150‑1 (MQ=255) tGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttac > 1:2161661‑M2/1‑71 (MQ=255) tGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttac < 2:2161661‑M2/76‑6 (MQ=255) CTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGCCCGTGCGGGGTCC‑‑‑CCCGTAGGAGCGGTTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGc > 1:4938942‑M1/1‑150 (MQ=255) CTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGACGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGc < 2:5145544‑M1/150‑1 (MQ=255) TCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGc > 2:5236745‑M1/1‑149 (MQ=255) TCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGc < 1:5237134‑M1/149‑1 (MQ=255) TTCGCGGGTAAAC‑CCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTgg < 1:102031‑M1/150‑1 (MQ=255) CGGGTAAAC‑CCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAAt < 2:4358658‑M1/150‑1 (MQ=255) GGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATc < 1:3323375‑M1/150‑1 (MQ=255) GGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATc < 1:1559613‑M1/150‑1 (MQ=255) GTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTg < 2:2797881‑M1/150‑1 (MQ=255) TAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCATTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGc < 2:4593551‑M1/150‑1 (MQ=255) AAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGcc < 1:3628743‑M1/150‑1 (MQ=255) aaT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcaaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttg < 1:4658208‑M2/150‑102 (MQ=255) AAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTCTAGTCGCTGGCACTCTGccc < 2:5017562‑M1/150‑1 (MQ=255) t‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaaggggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtg < 2:3613774‑M2/150‑104 (MQ=255) t‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTCTAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:3955130/1‑150 (MQ=255) t‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAGCCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 1:3833705/1‑150 (MQ=255) t‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 1:3434289/1‑150 (MQ=255) t‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:3661300/1‑150 (MQ=255) t‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 1:4916142/1‑150 (MQ=255) t‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:2636957/1‑150 (MQ=255) t‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 1:86876/1‑150 (MQ=255) t‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTGATAGTCGCTGGCAATCTGCCCCa > 1:2463892/1‑150 (MQ=255) t‑CCGCGCCTGTAGGAGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCATATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:5077666/1‑150 (MQ=38) ccGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCaa > 2:2759949/1‑150 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAaca > 2:1159291/1‑150 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtc < 1:1125280‑M2/150‑111 (MQ=255) tACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCACTCTGCCCCAACACCCtt > 2:3992040/1‑150 (MQ=255) tACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattc < 1:3955449‑M2/95‑57 (MQ=255) cAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcggg < 1:5180307‑M2/150‑114 (MQ=255) cAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttg < 1:1487984‑M2/78‑42 (MQ=255) aGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcgggc < 2:4111200‑M2/150‑115 (MQ=255) acgggggACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGTGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAg > 2:1985372/6‑150 (MQ=255) gcgGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAAc > 2:2321727/1‑150 (MQ=255) gggaCCGCGCACGGTCC‑‑‑CCCGTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcgggcaatca < 1:181878‑M2/149‑120 (MQ=255) ggACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACaa > 2:3067838/1‑150 (MQ=255) cGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcgggcaatcatgctg < 1:1850738‑M2/150‑125 (MQ=255) tGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGc > 1:2944815/1‑150 (MQ=255) cgcgGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCaa > 2:614173/1‑150 (MQ=255) | GCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAT‑CCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAA > NC_002947/4901271‑4901567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |