| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,293,407 | T→A | 5.1% | intergenic (‑91/+93) | PP_4660 ← / ← mdaB | LysR family transcriptional regulator/drug activity modulator B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,293,407 | 0 | T | A | 5.1% | 603.0 / 17.3 | 197 | intergenic (‑91/+93) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B |
| Reads supporting (aligned to +/- strand): ref base T (95/88); new base A (8/2); total (103/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.08e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.29e-01 | |||||||||||
Only 100 of 198 total aligned reads displayed.
ATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCG > NC_002947/5293258‑5293555 | gggcatgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑tt > 2:811642‑M1/134‑150 (MQ=255) gcatgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattgtatgtctgtaccGGCCTCTTCGCGGGC‑TTGc < 2:5116608‑M1/19‑1 (MQ=255) tgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCg < 2:2401051‑M1/22‑1 (MQ=255) tgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑GTGCCCg < 1:2746562‑M1/22‑1 (MQ=255) gCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTC > 2:4679121‑M1/1‑150 (MQ=255) gCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTC < 1:4269736‑M1/150‑1 (MQ=255) cggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑AAGCccgcgaa > 2:5150812‑M1/125‑147 (MQ=255) cggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑AAGCccgcgaa > 1:4424015‑M1/125‑147 (MQ=255) cggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑AAGCccgcgaa > 1:3029329‑M1/125‑147 (MQ=255) cggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagcaattttatgtctgtaccGGCCTCTTCGCGGGC‑AAGCccgcgaa > 2:3144526‑M1/125‑147 (MQ=255) cggcctgccgaccgtcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑AAGCccgcgaa > 2:102563‑M1/125‑147 (MQ=255) gcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑AAgcccgcgaaga > 2:1300892‑M1/123‑145 (MQ=255) gTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCA < 1:1139329‑M1/150‑1 (MQ=255) gTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCA < 1:5300410‑M1/150‑1 (MQ=255) gTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCA < 1:3526526‑M1/150‑1 (MQ=255) cctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCcac > 1:979672‑M1/122‑150 (MQ=255) ctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCcaca > 1:252562‑M1/121‑150 (MQ=255) gATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACaa < 1:2257364/150‑1 (MQ=255) acgaATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑GTGCCCGCTCCCACAAGTACTGCaaa > 2:1101787/1‑150 (MQ=255) aCCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCtt < 1:2670535/150‑1 (MQ=255) aCCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCtt < 1:28882/150‑1 (MQ=255) aCCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCtt < 1:3734865/150‑1 (MQ=255) cTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑a > 2:3946687/1‑150 (MQ=255) cTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑GTGCCCCCGCCCCCCAGTACTGCAAACTccaggg > 1:4452055/1‑146 (MQ=255) gTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCt < 2:3380253/150‑1 (MQ=255) gTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCt < 1:1295748/150‑1 (MQ=255) tcttcGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGc > 2:2746562/1‑150 (MQ=255) tcttcGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑GTTCCCCCAACCACAACTAAAGCAAAGTCCGTT‑AAAccagg > 1:2401051/1‑147 (MQ=255) tcttcGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGACCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGc < 1:3443176/150‑1 (MQ=255) gatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGc > 2:2255238‑M1/95‑150 (MQ=255) gatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGc < 2:3450277‑M1/56‑1 (MQ=255) cttcGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCg < 1:3177389/150‑1 (MQ=255) cGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTaa < 2:2612830/150‑1 (MQ=255) agcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAAt > 1:1725581‑M1/90‑150 (MQ=255) gATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACAGCAAACTCCTTG‑AAAACGGCGGAATa > 2:1310459/1‑150 (MQ=39) aTCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATAc < 1:1338728/150‑1 (MQ=255) tCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑GTGCCCCCGCCCACAAGGACGGCAAAGTCCGGG‑AAACCAGCCGAATAcc > 1:5116616/1‑150 (MQ=255) cGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑GTGCCCGCTCCCACAAGAACAGCAAACTCCATG‑AAAACAGCGTaaaaacg > 2:25601/1‑145 (MQ=255) cGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGAGTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑GTGCCCCCGCCCACAAGGACTGCAAAGTCCGGG‑AAACCAGCGGAATAccg > 1:1367781/1‑149 (MQ=255) ggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCtgtg > 1:2995633‑M1/83‑150 (MQ=255) ttttCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCtgtgg > 1:3060302‑M2/1‑145 (MQ=255) ttCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCtgtggga > 1:1030370‑M2/1‑143 (MQ=255) ttCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCtgtggga > 1:1030144‑M2/1‑143 (MQ=255) ttCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCtgtggga > 1:5085388‑M2/1‑143 (MQ=255) acaTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCGTG‑AAACCAGCGTAATACCggtgggggcg < 2:283738‑M2/150‑11 (MQ=255) acaTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCCCTCCCACAAGTACAGCAAAGTCCATG‑AAAACATCGTAATAACagtgggggcg < 1:1341421‑M2/150‑11 (MQ=255) acaTCAGGGCCGGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCGCCCACAAGTACAGCAAAGTCCGTG‑AAACCAGCGTAAAACCtgggggagcg < 2:612870‑M2/150‑11 (MQ=255) ccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCTGTGGGAGCgg > 2:4035859‑M1/76‑150 (MQ=255) caTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCGTTGCCCCACCCCACAA‑AACAGCAAAATACATG‑AAACCAGCGGAATAAACGTGGGGGCgg > 1:1111297/1‑150 (MQ=255) caTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgg < 1:2844683‑M1/150‑46 (MQ=255) caTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgg < 1:4163857‑M1/150‑46 (MQ=255) caTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCtgtgggagcgg > 1:2242382‑M2/1‑139 (MQ=255) caTCAGGGCCTGTGGCTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCtgtgggagcgg > 2:212273‑M2/1‑139 (MQ=255) cggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCTGTGGGAGCggg > 1:1203874‑M1/75‑150 (MQ=255) aTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcggg < 1:1923315‑M1/150‑47 (MQ=255) aTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCGGCGGAATACCtgtgggagcggg < 2:5121004‑M2/150‑13 (MQ=255) tCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggc < 2:5355384‑M1/150‑48 (MQ=255) cggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCTGTGGGAGCGGGCaa > 1:518‑M1/72‑150 (MQ=255) cggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCTGTGGGAGCGGGCaa > 2:1919667‑M1/72‑150 (MQ=255) ggCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCtgtgggagcgggcaagc > 2:2402801‑M2/1‑133 (MQ=255) ccTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCtgtgggagcgggcaagccc > 1:847713‑M2/1‑131 (MQ=255) gtgGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCCCACCCACAACTACTGCCAAGTCCGTG‑AAACCAGCGGAATAACggtgggagcgggccatcccgcg < 2:1526865‑M2/150‑23 (MQ=255) gtgGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑GTTCCCCCGCCCCAAAGGACTGCAAAGACCGTG‑AAAACAGCCGAATAACAGGGGGTGCGGGCAAccccccc > 1:1238206/1‑147 (MQ=255) tggttggtCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATAc < 1:4010389/126‑1 (MQ=255) tggttggtCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATAc > 2:4010389/1‑126 (MQ=255) cgcttccgaggcccatctggacacggtgtttggcaaggcacagtaattttatgactgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACACGTACTGCACAGTCCTTG‑AACCCTGCGTAAGACCTGTGGGAGCGGGCAAGCCCGCGAag > 2:3954946‑M1/62‑150 (MQ=255) ttgttCTGTGCATGTATTACTTAAGCTCTTTTGGCGGCCAAGTCCTGCGGCGCCTGTTTGGGCATCTTGGGGGGT‑TTGCCCGCTCCCACAAGTACTGAAATGTCCTTT‑AAACCTGCTTAATACCTGTGGTTGCGGGAAAGCCCGCGAaga < 2:220734/150‑1 (MQ=255) ttggtCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTTCCCGCTCCCAAAAGTAATGCAAAGTACTTG‑AAACCTGCGTAATACCagtgggagcgggcaaccccgcggaga < 2:5174935‑M2/150‑27 (MQ=255) gcttatgaggcccatctggacacggtgttgggccaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCCCAAGTACTGCAAAGTCCTTT‑AAACCTGCGTAATACCTGTGGGCGCGGGCACGCCCGCGAaga > 2:1677592‑M1/61‑150 (MQ=255) tatgtggcccatctggacaagttttttggctaggcacagtaattttttgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTTCAAAGTCATTT‑AAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGc > 2:1354738‑M1/58‑150 (MQ=255) gtCTGTGCATGTTTTATATACCGGGTTGTCGAGGCCATGTCCTGCGGGGCTTGTTTGGGCTTCTTCGCGGGC‑TTGCCCGCTCCCACACTTACTGCAATGTCTTTT‑AAACCTGCTTATTACGTGTGGGAGCGGGCAAGCCCGCGAAGAGGc < 2:4019270/150‑1 (MQ=255) gtCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggc > 2:4153164‑M2/1‑121 (MQ=255) gCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggc > 1:3785896‑M1/1‑81 (MQ=255) gCAAGGATTAGAGAACCGATTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑CTGCCCGCACCCCAAATTACTGCACACTCCATG‑CAACCGGCGGAATACCTGTGGGAGCGGGCAAGCCCCCGAAGAGGcccggac > 2:3584950/1‑145 (MQ=255) cAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCCCAAGTACTGCCAAGTCCGTG‑GAACCAGCGGAATACCGGTGGGGGCGGGCCAGCCCCCGCAGAGGCCGGTACa > 2:3929423/1‑150 (MQ=255) gtaTTACATACCGGCTGGTCTCGGCCAGGTCACGGGGCGCCTGTATGGGCCCGTTCGGGGGC‑TTGCCCGCCCCCAAACGTACTGAAACGTCGTTG‑AACCGTGCTTAATACCTGTGGGTGGGGGCACGCCCGCGAAGAGGCCGGTACAGAc < 2:4408377/148‑1 (MQ=255) ttAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑GTTCCCGCTCCCCCAAGTACTGCAAAGTCCGTG‑AAACCAGCGTAATAACAGTGGGAGCCGGCCAGCCCCCCAAGAGGCCCGTACAGACaaa > 1:5609855/1‑148 (MQ=255) ttAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑GTGCCCGCGCCCACAAGGACTGCAAAGTCCGTG‑AAAACGGGGTTAAACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATa > 1:5472499/1‑150 (MQ=37) tAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCCAAGTCCTTG‑AAACCTGCGGAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATaa > 2:1853477/1‑150 (MQ=255) tAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATaa > 2:3657792/1‑150 (MQ=255) aGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCGCCCACAATTACAGCAAAGTCCTTG‑AAACCTGCGTAATAACTGTGGGAGCGGGCAAGCCCCCGAAGATGCCGGTAAAGACAaaaa > 2:5428267/1‑150 (MQ=38) tAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑ATGCCCCCTCCCACAAATACTGCCAAGTCCGTG‑AAACCGGCGGAAAACCAGTGGGGGCGGGCAAGCCCCCGAAGAGGCCGGTAAACACAGaaaaat > 1:4659448/1‑148 (MQ=255) cacccgttGTCTCGGCCACGCCCAGGGGCGCGTGTAGGGGCCTCGTCGGGGGC‑TGGCCCGCTCCCACAAGTACTGAAATGTCCTGG‑AAACCTGGTTAATACATGTGGGTGCGGGCAAGCCGGCGAAGAGGCCGGTACAGAAATAAAATTa < 2:2891007/144‑1 (MQ=255) acccGCTTGTCGCGGCAACGCCCAGCGGCGCCTGTAGGGGCCTCTCCGCGGGC‑TTGCCCGCTCCCACAAGTACTCCAAAGTCCTTC‑AAACCTGCTTAACACGTGTGGGTGCGGGCACGCCCGCGAAGAGGCCGGTACAGACATAAAATTa < 2:3848874/148‑1 (MQ=255) aaCCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑GTGCCCCCAGCCACCAGTAATGCAAAGTCCTGT‑GAACCGGCGTGATACCGGTGGGCGCGGGCCACCCCGCGCAGAGGCCGGTACCGACATAAAAATa > 2:2507545/1‑150 (MQ=255) aCCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑GTGCCCCCGCCCAAAAGTACAGCAAAGTGCTTGTAAACATGGGT‑ATAACAGTGGGGGCGGGGCAGCCCGCGAAGAGGCCGGTAAAGAAATAAAATTaa > 2:2382770/1‑149 (MQ=255) ccGCTTGTCGAGGCCAAGTCCTGGGGCGCCTGTATGGGCCTCTTGGCGGGC‑TTGCCCGCTCCCACATGTAGTGCAAAGTCATTG‑AAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACt < 2:4101685/150‑1 (MQ=37) tCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACCAGGACAGCAAAGTCCTTG‑TAACCAGCGTAATACCAGTGGGAGCGGGCAAGCCCCCCAAGAGGCCCGTACAGACATAAAAATAAAGTGCCtt > 1:3236543/1‑150 (MQ=255) gAGGCCACGTCCTGCGGCGCCTTTTTGGGCTTCTTGGGGGGC‑TTGCCCGCTCCAACACTTACTTCAACGGCCTTG‑AAACCTGGTTAATACGTGTGGGAGGGGCCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGc < 2:1517056/150‑1 (MQ=255) gAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCtgtggga < 1:727791‑M2/98‑8 (MQ=255) tGTACGGGCCTCGTCGCGGGC‑TTGCCCGCTCCCACCggtattccgcaggtttcaaggactttgctgtacttgggggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttg < 2:3929367‑M1/150‑115 (MQ=255) tATGGGCCTCTTCGCGGGC‑GTGCCCCCTCCCACAAGGACTGCAAAGTCCAGG‑TAACCGGCGTCATACCTGGGGGAGCGGGCACGCCCCCGCAGAGGCCGGGACAGCCAGAAAATTACAGTGCCTTGCCAACCACCGTGTCCACATGGGcc > 2:3228105/1‑150 (MQ=255) ggCCTCTTCGCGGGC‑TTGCCCCCCCCCACAAATAATTCAAAGTACATG‑AAACAAGCCGAAAACAAGGGGGCGCGGGCAACCCCCCCAAGAAGCCGGTAAAGAAAAAAAATTACTGTGCCTTTCCAAAAACCGTTTACAGAAGGGccaaat > 2:1970508/1‑146 (MQ=255) TCTTCGCGGGC‑ATGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑TAACCTGCGGAATACCTGTGGGAGCGGGCAAGCCCGCGAAGATGCCGGTACAGACATACAATTACTGTGCCTTGCCAAACACCGTGTCCAGATGGGCCGCATAAGc < 2:2220048‑M1/150‑1 (MQ=255) ggaGCGGGC‑AAGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTg < 1:5511070‑M1/147‑1 (MQ=255) TTCGCGGGC‑TTGCCCGCTCCCACAAGTACAGCAAAGTCCTTG‑AAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTg < 2:1368686‑M1/150‑1 (MQ=255) cgcgGGC‑TTGCCCGCTCCCACAggtattacgcaggtttcaaggacttttcagtacttgtgggagcgggcaagcccccgcagaggcccatacaggcgccgcaggacttggccgcgacaagcggttatctaatccttgcacagaccaaccac > 2:2592522‑M1/1‑22 (MQ=255) gggggC‑GTGCCCGGACCCACAAGTACTGCAACGCCCTGG‑AACCCTGCTTTCTCCGGGGGGGCGCGGGCACGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCa < 2:3780935/148‑1 (MQ=255) GGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAAc < 1:1551659‑M1/150‑1 (MQ=255) TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAAcgccg < 2:4289120‑M1/150‑1 (MQ=255) | ATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTG‑AAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCG > NC_002947/5293258‑5293555 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |