| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,560,601 | T→A | 7.6% | intergenic (‑80/+94) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,560,601 | 0 | T | A | 7.6% | 573.8 / 8.6 | 210 | intergenic (‑80/+94) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| Reads supporting (aligned to +/- strand): ref base T (69/114); new base A (17/4); total (91/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.50e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 214 total aligned reads displayed.
CCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCA > NC_002947/5560453‑5560750 | tACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGACAGGGCCGCATAGCg > 2:3680914/1‑150 (MQ=255) tACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCg > 2:1842824/1‑150 (MQ=255) cTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCCACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCCAAAGGGCCCCCAAGCGG‑ccc > 2:970912/1‑150 (MQ=255) cTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑ccc < 1:2607697/150‑1 (MQ=255) cACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGGCGCGAAAGGGCCCCCTAGCGG‑CCCCGGc > 2:1363396/1‑150 (MQ=255) aCTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCTATGCGG‑ccctttcg < 2:1303857/150‑6 (MQ=255) aCTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAGAGCGG‑CCCCGGcc > 2:837513/1‑149 (MQ=255) tgtgCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGCAAGGGCCGCATAGCGG‑CCCCCGccaa > 2:1908978/1‑147 (MQ=255) tgtgCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCCAAGCGG‑CCCCGGccag > 2:3455507/1‑147 (MQ=255) gCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTc < 1:421105/150‑1 (MQ=255) gaGGTAATTAAGGTCGGCCTGGGCATGGTTTATTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTcc < 2:3915347/149‑1 (MQ=38) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGGAAGGGCCGCAAAGCGG‑CCCCGGCacggtcc > 2:3147406/1‑144 (MQ=255) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGACAGGGCCGCCTAGCGG‑CCCCGGcccattgc > 1:5470046/1‑143 (MQ=255) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTcc > 2:808304/1‑150 (MQ=255) aGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGGAAGGGCCGCATAGCGG‑CCCCCGCAAattacc > 1:2795043/1‑147 (MQ=255) gAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCACTTTCcgcg > 2:4475749/1‑150 (MQ=255) gAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCCCATAGCGG‑CCCCCGCAAattacccc > 1:2711370/1‑145 (MQ=255) aaaTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCgt < 2:1575377/150‑1 (MQ=255) aTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCGACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCgtgt < 1:3705129/150‑1 (MQ=255) tCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACGTGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTAt < 2:1636356/150‑1 (MQ=255) cAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATg < 2:2627094/150‑1 (MQ=255) ccTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAAc < 1:3244978/150‑1 (MQ=255) tGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCt < 1:5446048/150‑1 (MQ=255) gCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCTTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAATGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTggg < 1:3509804/150‑1 (MQ=255) aGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCCTAGCGG‑CCCCCGCCAATTCCGCGTGTATGCAACAAAACGGGGgc > 2:2475123/1‑150 (MQ=39) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCa < 1:125500/150‑1 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCa < 2:348747/150‑1 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCa < 1:2152578/150‑1 (MQ=255) gggCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTGGCGAAAAGGCCGCATAGCGG‑CCCCCGCCAATTACGCCGGGATGGAACAAACCTGGGGCGGCGATGCAGc > 2:2559116/1‑150 (MQ=255) atgatctggcggctcagctgcgcgccagcctgggccagttccgggcctgaagcctgcgcggtcctttgtgGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGc > 1:1878004‑M1/71‑150 (MQ=255) atgatctggcggctcagctgcgcgccagcctgggccagttccgggcctgaagcctgcgcggtcctttgtgGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGc > 2:4300409‑M1/71‑150 (MQ=255) ggACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCATAGCAGcccca < 2:5507657/150‑3 (MQ=255) gACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCATAGCAGccccag < 2:4291113/150‑4 (MQ=255) tggcggctcagctgcgcgccagcctgggccagttccgggcctgaagcctgcgcggtcctttgtgGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTc > 1:214458‑M1/65‑150 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGTGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGa < 2:2798507/150‑1 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGTGCCGCAAAGCGG‑CCCCCGCAAATTCCGCCTGTATGCAACAAAACTGGGGCTGCTAAGCAGCCCATTCGCGa > 2:3044119/1‑150 (MQ=38) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGa < 1:4072943/150‑1 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGa < 2:4823136/150‑1 (MQ=255) aGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGGGAGGGCCGCGTTTCGG‑CCCCGGCACTTTCCGGGTTTATGGCACAAACCTGGGGGTGGTATGGAGGGCTTTggcggg > 1:849042/1‑148 (MQ=255) cAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTGGGGTAAGGGGCGCATAGGGG‑GCCCGGGAATTTTCGGGTGTTTGGGACAAAGCTGGGGGTGGTTTTGAGGCCTTTAGGGacac > 2:1511851/1‑150 (MQ=255) cAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGacac < 2:261550/150‑1 (MQ=255) aCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTCGCGAAAGGGCCGCATAGCCG‑CCCCCGCAAATTCCGCGTGTATTCAACAAAACAGGGGCTGCTATGCAGCCCAGTCGCGACACaa > 2:2404687/1‑150 (MQ=255) aCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACaa < 1:3071341/150‑1 (MQ=255) tCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGG‑CCCCCGCAATTTACGCGGGTATGCAACAAACCTGGGGCTGCAATGCAGCCCTTTCGCGACACAAgg > 2:2301900/1‑150 (MQ=37) tCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCGTGTGTGGCGAAAGGGCCGCCTAGCGG‑CCCCCGCCAATTGCCCGGGGATGCAACAAACCAGGGGGGGCGATTCAGCCCGGTAGCGCCACaacg > 2:1116397/1‑148 (MQ=255) ccTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCTGGTGTGGGAGCGGCCTTGTGTCGCGAAGGGGCCGCATCGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGc < 1:725246/150‑1 (MQ=255) ccTTTTGTCATGTGTCGCCGACAGAATAGCAACACCGCTCTGGTGTGGGAGCGGCTTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCTTTTATGCAACAAACCTGGGGCTGCTTTGCAGCCCTTTCGCGACACAAGGc < 1:1836924/150‑1 (MQ=37) ttttGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑cccc < 1:5246920/85‑1 (MQ=255) tttGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTGGCGAAAGGGCCCCCAAGCGG‑CCCCCGCCAATTCCGCGGGTGTGCAACAAACCCGGGGCGGCGATGCCGCCCGTTCGCGACACACAGCCca > 1:3749648/1‑150 (MQ=255) tCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCCAGTTCCGCGGGTATGCAACAAACCTGGGGCTGCGATGCAGCCCGTTCGCGACACAAGGCCcacaca > 2:5151470/1‑148 (MQ=38) cttgtgTCGCCGACAGCATAGCAACACGGCTCTGGTGTGGGAGGGGCGTTGTGTCGCGAATGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACGTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAg < 1:788911/148‑1 (MQ=38) cATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAATGGGCCGCATCGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAg < 2:2082159/150‑1 (MQ=255) cATGTGTCGCCGACAGAATAGAAACCCCGCTCTGGTGTGGGAGGGGCCTTGGGTCGCCAACGGGCCGAATTGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAg < 1:5304877/150‑1 (MQ=38) aTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTGGCGAAAGTGGCGCATATCGG‑CCCCGGCAATTTGAGGGTGTTTTGAACAAAACTGGGGGTGCTATGAATGCCTTTGGCGAAACAAGGCCCACAAAgg > 2:5612162/1‑150 (MQ=255) aTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGCAAGGGCCGCATAGCGG‑CCCCGGCCAATTCCGCGGGTATGCAACAAACCAGGGGCTGCGATGCAGCCCGTTGGCGACACAAGGCCCACAAAgg > 2:4939371/1‑150 (MQ=38) aTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGGGGCGCGCAAGGGCCCCAAAGCGG‑CCCCCGCCAGTTCCCCGTGTATGCAACCAACCGGGGGCGGCGCTTCCGCCCGGTCGCGACCCAACGCCcacccagg > 2:334966/1‑145 (MQ=255) tgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGAcc < 1:1818153/150‑1 (MQ=255) ccGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCa < 2:4427033/150‑1 (MQ=255) cGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAg < 2:4804749/150‑1 (MQ=255) gACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTGGCGGAAGGGGCGCCAAGCGGCCCCCGCCAATTTCC‑CGGGTGTGGAACAAAACGGGGGCGGCGATGGACCCCCTTCGCGGCCCCAGGCCCACAAAAGACCccgcccg > 2:2515081/1‑147 (MQ=255) gCATAGCACCCCCGCTCGGGTGTGGGCGCGGCGTTGTGTCGCGAACGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTc < 1:3367689/150‑1 (MQ=38) gCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGTAAGGGCCGCATAGCGG‑CCCCCGCAAATTGCGCGTGTATGCCACAAAACAGGGGCTGCGATGCAGCCCATTCGCGACACAAGGCCCACCAACGACCGCGCCGGcgga > 2:4904586/1‑147 (MQ=37) gCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAAATTCCCCGTGTATGCAACAAACCTGGGGCTGCTATGCACCCCTTTCGCGACACAAGGCCCCCAAAGGACCGCCCAGGCTTc > 2:3594626/1‑150 (MQ=38) cATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGGAATGGCCGCCTAGCGG‑CCCCCGCCCATTCCCCGGGTATGCCACAAACCGGGGGCTGCTATGCAGCCCGTTAGCCCCACAACGCCCCCAAACGACCCCGCCGGCGTCa > 2:3091344/1‑150 (MQ=255) aTAGCACCACCGCTCCGGTGTGGGAGCGGCCTTGTGTCGCGAACGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAg < 2:5353449/150‑1 (MQ=255) tAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCCACAAACCGGGGGCTGCTCTGCAGCCCGTTCGCGACACAAGGCCCACAAAGGACCGCGCCCGCTTCAgg > 2:1278323/1‑150 (MQ=38) aaGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCTCGAAAGTGACGCATAGCGG‑CCCCCGCAAATTACGCCTGTAATCAACAAAACTGGGGCTGCTAATCAACCCATGCGCGACACAAGGACCACAAATGACCCCGCAGGcgactgg > 2:4665765/2‑144 (MQ=255) aaCACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCg < 1:5601943/150‑1 (MQ=255) acCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCCATTTACGCGTGTATGCAACAAACCGGGGGCTGCTATGCAGCCCATTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGaa > 2:893011/1‑150 (MQ=255) cTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTgg < 2:1760604/150‑1 (MQ=255) tCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTAt > 1:1355284/1‑89 (MQ=255) gtgtGGGAGCGGCCTTGTGTCGCGACAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACCAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAg < 2:4685274/150‑1 (MQ=255) CCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAg < 1:4498613‑M1/150‑1 (MQ=255) CCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAg < 2:5105975‑M1/150‑1 (MQ=255) GTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGa > 2:5404847‑M1/1‑150 (MQ=255) GTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGa < 1:2237516‑M1/150‑1 (MQ=255) GTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGa > 2:1686440‑M1/1‑150 (MQ=255) GTCGCGAAAGGGGCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCTGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgc < 2:3794616‑M1/150‑1 (MQ=255) TCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgcc < 1:4061887‑M1/150‑1 (MQ=255) TCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgcc < 1:2485379‑M1/150‑1 (MQ=255) GCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc > 2:782371‑M1/1‑150 (MQ=255) GCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc > 2:5293604‑M1/1‑150 (MQ=255) GCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc < 2:4327584‑M1/150‑1 (MQ=255) gaccGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACACACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCa > 1:5253850‑M1/5‑150 (MQ=255) gacaGGGCCGCATCGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCa < 1:4178918/147‑1 (MQ=255) GAACGGGCCTCATCGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCa > 1:4872932‑M1/1‑150 (MQ=255) GAAAGGGCCGCCTCGCGG‑CCCCGGCAATTACCGCGTGTATGCAACAACCCGGGGGCTGCTATGCAGCCCTTTCGCGAAACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCa > 1:970912‑M1/1‑150 (MQ=255) GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCa < 1:1703534‑M1/150‑1 (MQ=255) GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCa > 1:2559172‑M1/1‑150 (MQ=255) AAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAg < 1:1483454‑M1/150‑1 (MQ=255) AGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGat < 2:4589101‑M1/150‑1 (MQ=255) AGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGat < 2:4215967‑M1/150‑1 (MQ=255) GGGCCGCTATGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatc < 1:404098‑M1/150‑1 (MQ=255) GGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGTCGCCAGatca < 1:1130272‑M1/150‑1 (MQ=255) cGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGc < 1:3524330/115‑1 (MQ=255) cGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATcc > 2:2840192/1‑150 (MQ=255) gCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCa > 2:5458497/1‑150 (MQ=255) tAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCa < 2:4435789/150‑1 (MQ=255) tAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCa < 2:1599745/150‑1 (MQ=255) tAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCa < 2:645836/150‑1 (MQ=255) | CCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCA > NC_002947/5560453‑5560750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |