Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,639,457 T→G 6.3% intergenic (+33/+350) putA → / ← PP_5718 proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,639,4570TG 6.3% 793.2 / 28.6 233intergenic (+33/+350)putA/PP_5718proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
Reads supporting (aligned to +/- strand):  ref base T (105/113);  new base G (6/9);  total (111/122)
Fisher's exact test for biased strand distribution p-value = 6.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 234 total aligned reads displayed.

ACGGGCTGTCCAGCGGGGATCACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTT  >  NC_002947/5639309‑5639606
                                                                                                                                                    |                                                                                                                                                     
aCGGGCTGTCCAGCGGGGATCACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTc                                                                                                                                                      <  1:5592067/150‑1 (MQ=255)
      tGTCCAGCGGGGATCACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCGGATGACCATTGGCTAATGGCGGAGGGTTGTTGAAGACGAAGGAGAGCCTCGGcgcg                                                                                                                                                >  1:1660481/1‑147 (MQ=255)
       gTCCAGCGGGGATCACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCtctc                                                                                                                                               <  2:2729528/150‑1 (MQ=255)
       gTCCAGCGGGGATCACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCtctc                                                                                                                                               <  2:3810004/150‑1 (MQ=255)
        tCCAGCGGGGATCACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTcc                                                                                                                                              >  1:1624405/1‑150 (MQ=255)
         ccAGCGGGGATCACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCGAGGCTCTCCt                                                                                                                                             <  1:2243195/150‑1 (MQ=255)
           aGCGGGGATCACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTGGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCttt                                                                                                                                           >  2:5223503/1‑150 (MQ=255)
            gCGGGGATCACCAGATTGCGGTGGAGCTCCTGGTCTTCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTTATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCGAGGCTCTCCttct                                                                                                                                          <  1:1403543/150‑3 (MQ=255)
              ggggATCACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCGAGGCTCTCcttcttc                                                                                                                                        <  1:4300368/150‑2 (MQ=255)
              ggggATCACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAAAAGGAGAGCCGAGGCTCTCcttcttc                                                                                                                                        <  2:3207374/150‑2 (MQ=255)
               gggATCACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTa                                                                                                                                       <  1:3625144/150‑1 (MQ=255)
                  aTCACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGc                                                                                                                                    <  2:3415496/150‑1 (MQ=255)
                    cACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCGGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCGCTCCTTTTTTATGGGt                                                                                                                                  >  1:5391362/1‑150 (MQ=255)
                     aCCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTg                                                                                                                                 >  2:61177/1‑150 (MQ=255)
                     aCCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTg                                                                                                                                 >  1:4975173/1‑150 (MQ=255)
                      ccAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGc                                                                                                                                <  1:1961222/150‑1 (MQ=255)
                      ccAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGc                                                                                                                                <  2:1334137/150‑1 (MQ=255)
                       cAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCa                                                                                                                               >  2:3082144/1‑150 (MQ=255)
                       cAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCa                                                                                                                               >  1:4633502/1‑150 (MQ=255)
                               gcTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGa                                                                                                                       >  1:5299425/1‑150 (MQ=255)
                                  ggAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGc                                                                                                                    <  2:4073681/150‑1 (MQ=255)
                                   gAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCa                                                                                                                   >  2:4491177/1‑150 (MQ=255)
                                     gcgcCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAgg                                                                                                                 >  2:3369430/1‑150 (MQ=255)
                                     gcgcCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAgg                                                                                                                 >  2:1256882/1‑150 (MQ=255)
                                         cTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCt                                                                                                             >  2:28470/1‑150 (MQ=255)
                                         cTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCt                                                                                                             >  1:1150376/1‑150 (MQ=255)
                                          tGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAATAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTg                                                                                                            <  2:1948239/150‑1 (MQ=255)
                                           ggTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTgg                                                                                                           <  1:28470/150‑1 (MQ=255)
                                             tCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGAc                                                                                                         <  2:1690162/150‑1 (MQ=255)
                                             tCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGAc                                                                                                         >  2:4684323/1‑150 (MQ=255)
                                               aTCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTa                                                                                                       >  2:5596350/1‑150 (MQ=255)
                                               aTCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTa                                                                                                       >  2:4391059/1‑150 (MQ=255)
                                                tCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGATCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGAAGGGGCTGGACTaa                                                                                                      >  1:1382203/1‑150 (MQ=255)
                                                tCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTaa                                                                                                      >  1:449199/1‑150 (MQ=255)
                                                 cGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAAc                                                                                                     <  2:4975173/150‑1 (MQ=255)
                                                 cGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAAc                                                                                                     <  2:4422419/150‑1 (MQ=255)
                                                  gAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACa                                                                                                    <  1:3296542/150‑1 (MQ=255)
                                                   aGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAg                                                                                                   <  1:2393835/150‑1 (MQ=255)
                                                      gcgcgGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTg                                                                                                >  1:33904/1‑150 (MQ=255)
                                                        gcgGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCt                                                                                              <  1:358990/150‑1 (MQ=255)
                                                        gcgGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCt                                                                                              <  1:2164865/150‑1 (MQ=255)
                                                          ggTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCCGGGGCTGGACTAACAGGTGCTCa                                                                                            >  1:3988352/1‑150 (MQ=255)
                                                           gTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCAc                                                                                           <  1:4190569/150‑1 (MQ=255)
                                                            tGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCAcc                                                                                          >  2:2377282/1‑150 (MQ=255)
                                                             gagaGTGATCTCTGCTGCGGAGTGTGGTTTCTCCATCCTGATGTCCATTTGCTATTGTCTGAGGGTTGTTGAAGTCGTTGGAGAGCCTCGGCTCTCCTTTTTTATGCGTTCATGTCCTGAAGAAGTTGCTGGTCTTTGATGTGCTCAcga                                                                                         <  2:3894319/150‑3 (MQ=255)
                                                             gAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCa                                                                                         <  2:3949986/150‑1 (MQ=255)
                                                                cGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCttt                                                                                                                                           >  2:403859/1‑97 (MQ=255)
                                                                cGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCttt                                                                                                                                           <  1:403859/97‑1 (MQ=255)
                                                                cGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGaa                                                                                      <  2:4154466/150‑1 (MQ=255)
                                                                 gTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAAc                                                                                     >  1:3460616/1‑150 (MQ=255)
                                                                    aaCACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTg                                                                                  <  2:897741/150‑1 (MQ=255)
                                                                       acTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTc                                                                               >  1:2997765/1‑150 (MQ=255)
                                                                       acTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTc                                                                               >  1:684741/1‑150 (MQ=255)
                                                                        cTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCa                                                                              <  2:735796/150‑1 (MQ=255)
                                                                          gCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGGTGAGGGTTGTTGAAGAAGTAGGAGAGCCTCGGCTCTCCTTTTTTATGGGTGCTTGTCCTGAAGCTGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATg                                                                            >  1:2734220/1‑150 (MQ=255)
                                                                           cAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGc                                                                           <  1:2094643/150‑1 (MQ=255)
                                                                           cAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGc                                                                           >  1:1682882/1‑150 (MQ=255)
                                                                              cggcggGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCaa                                                                        <  2:2043966/150‑1 (MQ=255)
                                                                                      ggtAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACt                                                                <  1:1708149/150‑1 (MQ=255)
                                                                                         aaCGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTgg                                                             <  1:897020/150‑1 (MQ=255)
                                                                                         aaCGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTgg                                                             <  2:530265/150‑1 (MQ=255)
                                                                                          aCGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTggg                                                            >  1:363631/1‑150 (MQ=255)
                                                                                           cGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGgt                                                           <  2:3244910/150‑1 (MQ=255)
                                                                                                 ccTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGtcttc                                                     >  1:3938015/1‑150 (MQ=255)
                                                                                                   tgatgaCCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCtg                                                   >  2:668838/1‑150 (MQ=255)
                                                                                                     atgaCCATTGGCTAATGTCTGAGGGTTGTTGAAGATGATGGATAGCCTCGTCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGTCTGGACTAACAGGTGCTCACCTTTACGTGGTCATTCCAACGGTGACTTGGGTGTCTTCtgtt                                                 <  2:2658278/150‑1 (MQ=255)
                                                                                                     atgaCCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCtgtt                                                 <  2:3504424/150‑1 (MQ=255)
                                                                                                          cATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGtctt                                                      <  2:4955525/140‑1 (MQ=255)
                                                                                                          cATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTAc                                            >  2:3048647/1‑150 (MQ=255)
                                                                                                                 tAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTAt                                     >  1:2641011/1‑150 (MQ=255)
                                                                                                                   aTGGCTGAGGGTTGTTGAAGTAGTAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCATCGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATcc                                   >  2:2312351/1‑150 (MQ=255)
                                                                                                                     ggCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGGCTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATcccc                                 <  1:722670/150‑1 (MQ=255)
                                                                                                                      gCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCt                                <  1:1836824/150‑1 (MQ=255)
                                                                                                                      gCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCt                                <  1:1191839/150‑1 (MQ=255)
                                                                                                                      gCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCt                                <  1:1736028/150‑1 (MQ=255)
                                                                                                                      gCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCt                                <  1:2875553/150‑1 (MQ=255)
                                                                                                                       cTGAGGGTTGTTGAAGAAGACGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCCGTTGTTACCGTTTATCCCCTg                               <  2:4921835/150‑1 (MQ=255)
                                                                                                                        tGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTgg                              >  1:3801167/1‑150 (MQ=255)
                                                                                                                         gAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGa                             >  1:5073089/1‑150 (MQ=255)
                                                                                                                          aGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGaa                            <  2:4633502/150‑1 (MQ=255)
                                                                                                                                gttgAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATtctc                      <  1:4908432/150‑1 (MQ=255)
                                                                                                                                 ttgAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCg                     >  1:3122590/1‑150 (MQ=255)
                                                                                                                                 ttgAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCg                     <  1:4577266/150‑1 (MQ=255)
                                                                                                                                    aagaagaagGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCt                  <  1:606249/150‑1 (MQ=255)
                                                                                                                                      gaataagTAGATCCTAGGATCACCTTTTATATGCGTGCAAGTACTGAAGCAGCTGCAGGACAAACAGGTGCTCACCAGAACGAGTTCATGCCAACGGTGACTTGGGTGTATTCTGTTTTTACCGTTTATACCATCTAAATTCACGGCTGc                >  2:2557248/1‑150 (MQ=255)
                                                                                                                                      gaagaagGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGc                <  1:61177/150‑1 (MQ=255)
                                                                                                                                      gaagaagGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGc                >  2:1534327/1‑150 (MQ=255)
                                                                                                                                       aagaagGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTGCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGcc               >  2:5462260/1‑150 (MQ=255)
                                                                                                                                         gaagGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCAAACGGTGACTTGGgt                                                           >  1:4348973/1‑104 (MQ=255)
                                                                                                                                          aagGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTgg            <  2:4748705/150‑1 (MQ=255)
                                                                                                                                           agGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTggg           <  2:2405659/150‑1 (MQ=255)
                                                                                                                                           agGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTggg           >  1:762911/1‑150 (MQ=255)
                                                                                                                                           agGAGAGCCGAGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCGGGAAATTCTCGGCTGCCTggg           >  2:3550133/1‑150 (MQ=255)
                                                                                                                                            ggAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTAc                                            >  2:1339501/1‑116 (MQ=255)
                                                                                                                                            ggAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGc          >  1:971715/1‑150 (MQ=255)
                                                                                                                                            ggAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGc          >  1:5478845/1‑150 (MQ=255)
                                                                                                                                             gagaGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTTCCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGcc         >  2:1563876/1‑150 (MQ=255)
                                                                                                                                                agCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGt      <  1:251500/150‑1 (MQ=255)
                                                                                                                                                agCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGt      >  1:11366/1‑150 (MQ=255)
                                                                                                                                                    tCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCtt  >  2:1780301/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
ACGGGCTGTCCAGCGGGGATCACCAGATTGCGCTGGAGCGCCTGGTCATCGAGCGCGCGGTGAGCGTGAACACTGCAGCGGCGGGTGGTAACGCCAGCCTGATGACCATTGGCTAATGGCTGAGGGTTGTTGAAGAAGAAGGAGAGCCTCGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTT  >  NC_002947/5639309‑5639606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: