Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,701,589 A→G 8.6% intergenic (+36/‑176) pyrC' → / → hslV dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,701,5890AG 8.6% 422.1 / 18.7 140intergenic (+36/‑176)pyrC'/hslVdihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
Reads supporting (aligned to +/- strand):  ref base A (41/85);  new base G (5/7);  total (47/93)
Fisher's exact test for biased strand distribution p-value = 5.34e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 141 total aligned reads displayed.

GTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCAC  >  NC_002947/5701440‑5701735
                                                                                                                                                     |                                                                                                                                                   
gTTGCTGGCGAACAATGGGTCTCCCGTGGCGAGAACTGCCCGGTCATCGGCCACGGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGAGGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTCGCGGGCACGCCCGCTCCCACAGGa                                                                                                                                                     <  2:3525110/150‑1 (MQ=255)
  tGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCGTAGCGGGCACGCCCGCTCCCCCAGGATc                                                                                                                                                   >  2:1613853/1‑150 (MQ=255)
    cTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATcac                                                                                                                                                 <  1:1582625/150‑1 (MQ=255)
    cTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATcac                                                                                                                                                 >  2:4103702/1‑150 (MQ=255)
     tGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACCCGATcacc                                                                                                                                                >  1:2940278/1‑150 (MQ=255)
      ggCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGGTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCAGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATcacca                                                                                                                                               <  2:5621075/150‑1 (MQ=255)
       gCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATcacccc                                                                                                                                              >  1:4585726/1‑148 (MQ=255)
       gCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATcaccac                                                                                                                                              <  2:3540123/150‑1 (MQ=255)
         gAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTCTACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCGCCCCCCGGATcacccccc                                                                                                                                            >  1:5319961/1‑146 (MQ=255)
         gAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACaa                                                                                                                                            >  2:2203561/1‑150 (MQ=255)
           aCAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACaagt                                                                                                                                          >  1:1053813/1‑148 (MQ=255)
            cAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTc                                                                                                                                         >  2:4572357/1‑150 (MQ=255)
             aaTGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCCCAATTcc                                                                                                                                        >  2:5057723/1‑150 (MQ=255)
             aaTGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTcc                                                                                                                                        <  1:4439316/150‑1 (MQ=255)
             aaTGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTcc                                                                                                                                        <  2:3085308/150‑1 (MQ=255)
              aTGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCa                                                                                                                                       <  2:4091881/150‑1 (MQ=255)
              aTGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCa                                                                                                                                       <  1:3617199/150‑1 (MQ=255)
               tGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCCCAGGCTCACCCCAATTCCaa                                                                                                                                      >  1:2828271/1‑150 (MQ=255)
               tGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCaa                                                                                                                                      <  1:3828618/150‑1 (MQ=255)
               tGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCaa                                                                                                                                      <  1:1644079/150‑1 (MQ=255)
               tGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCaa                                                                                                                                      <  1:1443139/150‑1 (MQ=255)
               tGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCaa                                                                                                                                      >  2:2265736/1‑150 (MQ=255)
                 gTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAgg                                                                                                                                    >  2:583582/1‑150 (MQ=255)
                 gTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAgg                                                                                                                                    <  2:1331246/150‑1 (MQ=255)
                    ctcCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCAt                                                                                                                                >  1:2778475/1‑150 (MQ=255)
                    ctcCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCAt                                                                                                                                <  2:1197460/150‑1 (MQ=255)
                      cccGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCAtgt                                                                                                                              <  1:1494247/150‑1 (MQ=255)
                       ccGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACCATTCCAAGGCAtgtg                                                                                                                             >  2:3382966/1‑150 (MQ=255)
                       ccGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCAtgtg                                                                                                                             <  1:2255376/150‑1 (MQ=255)
                       ccGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGGCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACACTTCCAAGGCAtgtg                                                                                                                             >  2:2531596/1‑150 (MQ=255)
                           ggCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTaa                                                                                                                         <  2:4801688/150‑1 (MQ=255)
                            gCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCCTGCTTAGCGGGCACGCCCGCTCCCACAGGATCCCCACAATTCCCAGGCCGGTGGTAAc                                                                                                                        >  1:2388890/1‑150 (MQ=255)
                            gCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAAc                                                                                                                        <  2:699495/150‑1 (MQ=255)
                              gagaACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAAccc                                                                                                                      >  1:3096767/1‑150 (MQ=255)
                               agaACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCt                                                                                                                     <  1:1198468/150‑1 (MQ=255)
                               agaACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCt                                                                                                                     <  2:2710551/150‑1 (MQ=255)
                                 aaCTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCtgt                                                                                                                   <  1:1066890/150‑1 (MQ=255)
                                 aaCTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCtgt                                                                                                                   <  1:1066839/150‑1 (MQ=255)
                                  aCTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCtgtg                                                                                                                  <  2:2881695/150‑1 (MQ=255)
                                  aCTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCtgtg                                                                                                                  <  2:972204/150‑1 (MQ=255)
                                   cTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTgg                                                                                                                 <  1:293556/150‑1 (MQ=255)
                                      cccGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCATGCCCGCTCCCACAGGGTTACCACATGCCTTGGAATTGTGGTGATCCTGTGGGAg                                                                                                              <  2:3537199/150‑1 (MQ=21)
                                      cccGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAg                                                                                                              >  2:4564554/1‑150 (MQ=255)
                                       ccGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCCCAAATCCAAGGCATGTGGTAACCCGGTGGgcgc                                                                                                             >  1:4414036/1‑150 (MQ=255)
                                       ccGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGAGGGCCACCTCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGc                                                                                                             <  2:122828/150‑1 (MQ=255)
                                         gTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCgg                                                                                                           <  2:101902/150‑1 (MQ=255)
                                          ttCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACACTTCCAAGGCATGTGGTAACCCTGTGGGAGCggg                                                                                                          >  2:358193/1‑150 (MQ=255)
                                          ttCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCggg                                                                                                          <  1:3850756/150‑1 (MQ=255)
                                           tCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGc                                                                                                         <  2:1000252/150‑1 (MQ=255)
                                             aTCGGCCTCTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCGTCGAGGGCTGAGTACCATGCTTCGCGGGCATGCCCGCTCCCCCAGGGTTACCACATGCCCTGGAATTGTGGTGATCCTGTGGGAGCGGGcgt                                                                                                       <  2:3400827/150‑3 (MQ=12)
                                             aTCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCAt                                                                                                       <  1:3306268/150‑1 (MQ=255)
                                             aTCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCAt                                                                                                       <  1:4572357/150‑1 (MQ=255)
                                             aTCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAAATCCAAGGCATGTGGTAACCCAGTGGGAGCGGGcct                                                                                                       >  1:3917348/1‑148 (MQ=255)
                                              tCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGGTTACCACATGCCTTGGAATTGTGGTGATCCTGTGGGAGCgatgact                                                                                                      >  1:1578427/1‑144 (MQ=21)
                                                  gcACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCTACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCcg                                                                                                  >  2:5622587/2‑150 (MQ=255)
                                                  ccACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAAATCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCAGGCCcg                                                                                                  >  2:757892/1‑150 (MQ=255)
                                                     ctgcctgcCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCcgctc                                                                                               <  1:3399542/150‑3 (MQ=255)
                                                      tgcctgccGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGaa                                                                                              <  1:2628999/150‑1 (MQ=255)
                                                      tgcctgccGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGaa                                                                                              <  1:4474012/150‑1 (MQ=255)
                                                       gcctgccGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAAt                                                                                             <  1:5472647/150‑1 (MQ=255)
                                                       gcctgccGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAAt                                                                                             <  2:3843089/150‑1 (MQ=255)
                                                          tgccGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCATGCCCGCTCCCACAGGGTTACCACATGCCTTGGAATTGTGGTGATCCTGTGGGa                                                                                                               <  1:2847083/129‑1 (MQ=18)
                                                           gccGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGGTTACCACATGCCTTGGAATTGTGGTGATCCTGTGGGa                                                                                                               <  1:2365386/128‑1 (MQ=18)
                                                           gccGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGGTTACCACATGCCTTGGAATTGTGGTGATCCTGTGGGa                                                                                                               <  1:2365596/128‑1 (MQ=18)
                                                           gccGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGGTTACCACATGCCTTGGAATTGTGGTGATCCTGTGGGa                                                                                                               >  2:2365596/1‑128 (MQ=18)
                                                             cGGGCGCGGTGCGTTATCCCTGGGTCGCGGGCCACCTCTGCCACGAGGCCTGAGTACCATGCTGAGCGGGCACGCCCGCTCCCCCAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGGGGGAGCGGGCATGCCCGCGAATGCCTTc                                                                                       <  2:4548037/150‑1 (MQ=255)
                                                             cGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCCGGCCCGCGACTGGCTTc                                                                                       >  2:2410211/1‑150 (MQ=255)
                                                              gggCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACCATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCCTGCCCGCGCAGGCCGTcc                                                                                      >  1:1250347/1‑149 (MQ=255)
                                                              gggCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCACGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTATCCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTca                                                                                      <  2:1597294/150‑1 (MQ=255)
                                                              gagcgcGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACCGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTca                                                                                      <  2:958142/148‑1 (MQ=255)
                                                                 cgcgGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACAt                                                                                   <  2:5378991/150‑1 (MQ=255)
                                                                 cgcgGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACAt                                                                                   <  2:5378931/150‑1 (MQ=255)
                                                                  gcgGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATa                                                                                  <  1:2612426/150‑1 (MQ=255)
                                                                          ttATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCCCAGGATCACCACCATTCCAAGGCCTGTGGTACCCCTGTGGGAGCGGGCCGGCCCGCGAATGCCTGCCCCGACTcccccc                                                                          >  2:3775920/1‑150 (MQ=255)
                                                                           tataCCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGCAGGCCTTCACCTAGtgcggcgg                                                                         >  2:1759573/1‑143 (MQ=39)
                                                                              aCCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACACTTCCCAGGCCTGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGACTGCCGTCCCCTCGGCCCCCCggcc                                                                      >  2:5029094/1‑147 (MQ=37)
                                                                              aCCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCCAGGCATGTGGTAACCCAGTGGGAGCGGGCATGCCCGCGAATGCCGTCACAGAGGCGCCCCGccg                                                                      >  1:4489266/1‑149 (MQ=38)
                                                                               ccTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCaa                                                                     <  1:611445/150‑1 (MQ=255)
                                                                                   ggTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAgcgc                                                                 <  2:3535762/150‑1 (MQ=255)
                                                                                                aTCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATccc                                                    <  1:1451265/150‑1 (MQ=255)
                                                                                                       aCGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAAtt                                                                                                                                          <  2:1323729/58‑1 (MQ=255)
                                                                                                       aCGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAAtt                                                                                                                                          >  1:1323729/1‑58 (MQ=255)
                                                                                                       aCGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGt                                             <  1:1415337/150‑1 (MQ=255)
                                                                                                       aCGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGt                                             <  1:4253805/150‑1 (MQ=255)
                                                                                                                 aGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCtt                                   <  2:3465497/150‑1 (MQ=255)
                                                                                                                  gTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTc                                  <  1:745167/150‑1 (MQ=255)
                                                                                                                   tACCATGCTTAGCGGGCACGCCCGCTCCCCCAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTcc                                 <  1:2410211/150‑1 (MQ=255)
                                                                                                                     ccATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTcccc                               <  1:1859235/150‑1 (MQ=255)
                                                                                                                        tGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCccccca                            <  1:769747/150‑1 (MQ=255)
                                                                                                                             aGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCcccccaccccc                       <  1:5325347/150‑1 (MQ=255)
                                                                                                                             aGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCcccccaccccc                       <  1:5325295/150‑1 (MQ=255)
                                                                                                                              gCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCggg                                                                                                          >  2:1725226/1‑66 (MQ=255)
                                                                                                                              gCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCcccccaccccca                      <  1:4436310/150‑1 (MQ=255)
                                                                                                                              gCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCcccccaccccca                      <  2:1964754/150‑1 (MQ=255)
                                                                                                                                gggCACGCCCGCGCCCCCCGGCTCCCCCCACTGCCCCGGGAGGTGGGAACCCGGTGGGAGCGGGCAGGCCCGCGAAGGCCGTCACCTAGGCCCCCCGCCAAGCGCGACCATTCAGCCCCCCGGGTTGAAATCCTTCCCCCCACCCCCata                    <  2:5223480/150‑1 (MQ=255)
                                                                                                                                cggCACGCCCGCTCCCCCAGGAACACCACACGTCCACGGCATGTGGCAACCCGGTGGGAGCGGGCATGCCCGCGAATGCCTTCACAGTGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCata                    <  2:2828271/149‑1 (MQ=255)
                                                                                                                                   cACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCTTGTGGTAACCCTGTGGGATCGGGCATGCCCGCGTATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCACCGGTTGAATTCCTTGCCCCCACCCCCATATgc                 <  2:4830569/150‑2 (MQ=255)
                                                                                                                                    aCGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTca                                                                                      <  1:4285363/80‑1 (MQ=255)
                                                                                                                                     cGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCAGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGt               <  1:2265736/150‑1 (MQ=255)
                                                                                                                                        ccGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTg            <  1:3334444/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
GTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCAC  >  NC_002947/5701440‑5701735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: