| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,729,286 | T→A | 11.5% | intergenic (‑183/+111) | PP_5024 ← / ← opgH | amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,729,286 | 0 | T | A | 11.5% | 413.2 / 4.0 | 168 | intergenic (‑183/+111) | PP_5024/opgH | amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H |
| Reads supporting (aligned to +/- strand): ref base T (51/86); new base A (18/4); total (76/92) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.19e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 178 total aligned reads displayed.
TTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGG > NC_002947/5729137‑5729435 | ttATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCt < 2:3668437/150‑1 (MQ=255) tcttGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTa < 2:3478617/148‑1 (MQ=255) tATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTa < 2:626875/150‑1 (MQ=255) tATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTa < 2:665779/150‑1 (MQ=255) tgtgtgGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGCTAGGCCAAAAATCTTCGCGGG‑TGAACCCGCTCCTACaa < 1:4730837/150‑1 (MQ=255) tgtgTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACaa < 1:5186206/150‑1 (MQ=255) tgtgTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACaa < 2:2796182/150‑1 (MQ=255) tgtgTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACaa < 2:2182008/150‑1 (MQ=255) tgtgTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGCTCACGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACaa < 1:1905802/150‑1 (MQ=255) gtgtTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAg < 1:3926097/150‑1 (MQ=255) tgtTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAgg < 2:4326162/150‑1 (MQ=255) ttGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGc < 1:2166716/150‑1 (MQ=255) cACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCAtg‑t < 2:100245/150‑1 (MQ=255) cACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCAtg‑t < 2:5024408/150‑1 (MQ=255) cACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGCGAGGCCAAAAAGCTTCGCGGG‑TGATCCCGCTCCTACAAGGGCAtg‑t < 1:751355/150‑1 (MQ=255) aCGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACCAgggatacac < 2:718961/150‑7 (MQ=255) ggCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGGACCCCCGCCGACAAGGGccggggtt > 1:2368000/1‑143 (MQ=255) ggCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTa > 1:3731165/1‑150 (MQ=255) ggCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCGCCCACCAGGGCCGG‑TGTa > 2:1098353/1‑150 (MQ=255) tACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCt < 1:5588114/150‑1 (MQ=255) tACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTGCGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCt < 1:4396402/150‑1 (MQ=255) tACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGCTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCt < 1:1560311/150‑1 (MQ=255) aCTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTg < 1:2064899/150‑1 (MQ=255) cTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTgg < 1:4619865/150‑1 (MQ=255) tGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGt < 2:58830/150‑1 (MQ=255) ggCCGAAGCGTCGTTTCGGAGAGGGATGCTAAGGCTTGGCGGCCCGTGGACCTAGAGCCGCAGGGTGAGTTTGTTGGCCAAATTGAGGGGGTTTGGCCAAATAGCTTCGCGGT‑TGAACCCGCTCCTAAAAGGGAATG‑TGTAT‑CCCTGGTa < 1:1080910/150‑1 (MQ=255) ggCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTa < 2:5590707/150‑1 (MQ=255) ggCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTa < 2:5626470/150‑1 (MQ=255) gCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAg < 1:388680/150‑1 (MQ=255) gCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAg < 2:1346158/150‑1 (MQ=255) gCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCCCGCCTACAAGGGCATG‑TGTAT‑ACCAGGTAg > 1:4653906/1‑150 (MQ=255) gCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGCGAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAg < 1:2873426/150‑1 (MQ=255) ccGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCCCTCCAACAAGGGCATG‑TGTAT‑CCCTGGTAgg > 1:5560276/1‑150 (MQ=255) cGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑GGTACCCGCGCCGACAACGGCCAG‑TGGAT‑CCCgggggggg > 1:1717877/1‑145 (MQ=255) aaGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGc < 2:1707347/150‑1 (MQ=255) aGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCACCTACAACGGCATG‑TGTAT‑CCCGGGTAGGAGCg > 1:5094958/1‑150 (MQ=255) gCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCgg < 2:3843646/150‑1 (MQ=255) gCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCgg < 2:3844005/150‑1 (MQ=255) cgtcgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCggg < 2:2842026/150‑1 (MQ=255) tcgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCgg < 1:2500970/147‑1 (MQ=255) tcgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGtt < 2:432038/150‑1 (MQ=255) tcgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCACCAACAAGGGCCGG‑TGTAT‑CCCGGGGAGGGGCGGGtt > 2:1211459/1‑150 (MQ=255) gtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTTGAACCC‑CACCTACAAGGGGATG‑TGTAA‑ACCAGGTAGGAGCggggtga > 2:1860191/1‑146 (MQ=255) gtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGTACCCCCGCCTCCAAGGGCAGG‑GGTAT‑CCCGGGGAGGGGCGGGGTcc > 2:1859955/1‑149 (MQ=255) ggAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCAACAAGGGCAAG‑TGTAT‑CCCGGGGATGAGCGGGTTCAccccc > 2:1237739/1‑148 (MQ=255) gcgggATGCTAACGCAGGGCGGCCCGTGGACCTCGAGCCGCCGGGGTACTTTGTTGGCCAAATTGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACCCGGG‑ATA‑CACATGCCCTTGTAGGAGGGGGTTCACCCGCGaa < 2:287956/148‑1 (MQ=18) ggATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAAACCGCTCCAACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAagag > 2:817537/1‑150 (MQ=255) aaCGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCCCTCCGAACACGGCCTG‑TGTAT‑CCCGGGTAGGTGCGGGTTCACCCCCGCAGAGGCCCggg > 2:1947904/1‑149 (MQ=255) gCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑GGTACCCCCGCCGGAAAAGGCAAG‑GGTGT‑ACCGGGGAGGGGCGGGGTGGCCCCCGCAGACGCCCGGGCaa > 1:1117502/1‑149 (MQ=255) aTGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGTACCCCCGCCAACCAGGGCCTG‑GGTAT‑CCCGGGTGGGAGCGGGTTACCCCGCGCAGAGGCCCGGGCAAgc > 1:925304/1‑150 (MQ=255) aTGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGGACCCGCGACGACAAGGGCAGG‑GGTAT‑ACCGGGGTGGAGCGGGTTCACCCCCCCAGAGGCCCGGGCAAgc > 1:2656309/1‑150 (MQ=255) ccGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGGACCCGCGCCTACAAAGGCCTG‑TTTAT‑GCCGGGTTGGAGCGGGGTGACCCCCGGAGAGGCCCCGGCAAGCGCCCCgga > 1:1696318/1‑148 (MQ=255) gTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAgg < 2:4107230/150‑1 (MQ=255) tGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCCCGCCTACAAGGGCCTG‑GGTAT‑CCCTGGGAGGGGCGGGTTCACCCGCGCAGAGGCCCGGGCCTGCGCCCCGGAggg > 2:3297071/1‑150 (MQ=255) tGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑GGAACCCCCGCCTAAAAGGGCCAG‑TTCAA‑CCCGGGTTGGTGCGGGTTGAACCGCGAACAGGCCCCGTCAAGCGCCCCCGAggg > 1:405729/1‑150 (MQ=255) ccGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTATGCCAAAAAGCTTCGCGGG‑TGAAACAGCTACAACCAGGGCATG‑TGTAA‑ACCTGGGAGGGGCGGGTTCAACCGCGAAGAAGCCCCGTCATGCGCCCCCGAGTGCGGGGTCAtag > 1:5116812/1‑148 (MQ=255) ccgggggACTTTGTTGGCCAAAATGAGGGGGTTCGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCgggg < 2:5507732/148‑1 (MQ=255) ccgggggACTTTGTTGGCCAAAAGGCGGGGGTTTGGCCAAAAAGCTTCGCGGG‑TGACCCCGCTCCTACCCGGGCATG‑TTTAT‑CCCGGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCgggg < 2:2465436/148‑1 (MQ=255) cAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACACGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCgggg < 1:4215414/150‑1 (MQ=255) cAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGTGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCgggg < 2:3088571/150‑1 (MQ=255) cAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑GGTAACCCCGCCGAAAAGGGGATG‑TTTTTACCCGGGTTGCTG‑GGGGTGGCCCGCCGAGTGGCCCGGGGATGCGCCCCGGGGGGGGGGGTGAGCgggg > 1:4943956/1‑150 (MQ=255) aGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGTACCCGCTCCTACAAGGGGCTG‑TGTGT‑CCCTGGTTGGCGCGGGGGGACCCCCGCCCAGGCCCGGGCCTGCGCCCCCGAGGGCGGGGTCATAggggg > 2:36740/1‑149 (MQ=255) aGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGGACCCCCTACTACAACGGCCTG‑TGTCT‑CCCTGGGAGGATCGGGTTGAACCGCGCAGAGGCCCGGTCATGCGCCCCGGGGGGCGGGGTGATAggggg > 2:36833/1‑149 (MQ=255) ggggACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACACCCACCAACAAGGGCATG‑TGTAT‑CCCAGGTAGGAGCCGGTTCACCCGCGAAGAGGCCCGGTCAAGCGCCCCCTAGGGCCGGGTCAACGGGgcgc > 2:1664568/1‑150 (MQ=255) gACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGa < 2:427048/150‑1 (MQ=255) tgttgGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAAccgc < 2:1259137/150‑1 (MQ=255) tgttgGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAAACCCCTACAAAAAGGGCCTG‑TGTAT‑CCCGGGGAGGGGCGGGTTCACCCGCGCAGAGGCCCGGTCATGCGCCCCGGATGGCGGGTTCATCGGGGCGCCGAAcccc > 2:5306857/1‑148 (MQ=255) ttgGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGTACCCGCTGCTTCAAGGGGATG‑TGTAT‑GCCTGGGTGGTGGGGGTTCTCCCGCGGAGTGGCCCGGTCATTCGCCCCGTAGGGGGGGGTGCTCGGGGGGCCGAAccgccg > 2:1055284/1‑150 (MQ=255) ccAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TTAACCCCCTCCAACAAGGGCATG‑TGTAT‑CCCTGGGAGGAGCGGGTTCACCCCCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGCACCGCCGCGac > 2:3224303/1‑149 (MQ=255) ccAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGGAACCCCTCCAACAACGGCATG‑GGTAT‑ACCGGGGAGGAGCGGGTTCACCCCCGCAGAGGCCCCGGCAATCGCCCCGTAGGGCGGGGTGATCGGGGCGCCGAACCCCCCCGaa > 2:2355084/1‑150 (MQ=255) ccAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGaa > 2:4686466/1‑150 (MQ=255) gtggggtTTTGGCCAAAACGCTTGGGGGG‑TTAACCCGCTCCTACACGGGCATG‑TTTAT‑CCGTGTTAGGAGGGGGTAACCCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGAccc < 2:1395261/148‑1 (MQ=255) ggggTTAGGCCAAAAAGCTTCGCGGG‑TGTACCCGCTCCTAAAATGGGATG‑TGTAT‑GCCTGGTTTGTGCGGGTTGAGCCGCGAAGAGGGCCGGTCATGCGCCCCGTATGGGGGGTTGATGGGGGCGCCGTACCGCCGCGAACAGAACCggt > 2:2949185/1‑148 (MQ=255) aGGCCAAAAAGCTTCGCGGG‑GGAACCCCCTCCTACAAGGGCCTG‑GGGAT‑ACCGGGGAGGAGCGGGTTCACCCGCGCAGAGGCCCGGGCATGCGCCCCGGAGGGCGGGTTCATCGGGGCGCCGAACCGCCCCGAACACACCCCCTCAAgcg > 2:3386166/1‑150 (MQ=255) ggCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACACGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAgcgc < 2:5302004/150‑1 (MQ=255) cAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGt < 2:3233918/52‑1 (MQ=255) cAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGt > 1:3233918/1‑52 (MQ=255) acaGCTTCGCGGT‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCGGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCcgacga < 2:5184501/148‑1 (MQ=255) aaaGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCcgacga < 2:5592324/150‑1 (MQ=255) cgCTTCGCGGG‑GGACCCCGCTCCTACCCGGGCAGG‑GGTAT‑CCCTGGTTGGCGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAgg < 2:4016621/149‑1 (MQ=255) gcgggggg‑CGACCCCGCCCCTACACGGCCATG‑TGTAT‑CCCTGGTCGGCGGGGGTACACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTc < 1:348710/145‑1 (MQ=255) g‑TGAACCGGCTCCAACATGGG‑ATGTTGTAC‑CCCTGGTAGGTGGGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGc < 1:5003019/150‑1 (MQ=255) aaCCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTg > 2:4981501/1‑150 (MQ=255) aCCCGCCCCAACACGGGCTTG‑TTTAG‑CCCTGGTTGGTGGGGTTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGc < 1:3984564/150‑1 (MQ=255) cccGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCg > 1:3982330/1‑150 (MQ=255) ccGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGt > 2:966152/1‑150 (MQ=255) ccGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGt > 2:4514057/1‑150 (MQ=255) ccGCACCTACAAGGGATTG‑TTTAT‑CCCTGTTAGGTGCGGTTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGt < 1:1252651/150‑1 (MQ=255) tCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTc > 1:2885863/1‑150 (MQ=255) tCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTc > 2:1564668/1‑150 (MQ=255) ccTACTTGGGCTTG‑TGTAT‑CCGGGGTTGTGGGGGGTTCCCCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCa < 1:3030732/150‑1 (MQ=255) ccTACACGGGCAGG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCa < 2:2656309/150‑1 (MQ=255) cTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAg > 2:4855648/1‑150 (MQ=255) cTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAg > 2:4836393/1‑150 (MQ=255) cTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAg < 2:3694420/150‑1 (MQ=255) tACACGGGCATG‑TGTAT‑CCCGGGTTGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAgg < 2:5488244/150‑1 (MQ=255) tACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAgg > 1:3830780/1‑150 (MQ=255) tACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAgg > 1:682780/1‑150 (MQ=255) tACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAgg > 2:2741794/1‑150 (MQ=255) tACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAgg > 2:9526/1‑150 (MQ=255) | TTATTGTGTTGGCACGGCCGTACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGG‑TGAACCCGCTCCTACAAGGGCATG‑TGTAT‑CCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGG > NC_002947/5729137‑5729435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |