Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,729,306 T→G 15.2% intergenic (‑203/+91) PP_5024 ← / ← opgH amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,729,3060TG15.2% 415.6 / 8.4 183intergenic (‑203/+91)PP_5024/opgHamino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
Reads supporting (aligned to +/- strand):  ref base T (72/69);  new base G (25/9);  total (105/78)
Fisher's exact test for biased strand distribution p-value = 2.11e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 194 total aligned reads displayed.

TACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAGCGGCG  >  NC_002947/5729157‑5729455
                                                                                                                                                      |                                                                                                                                                     
tACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCt                                                                                                                                                       <  1:5588114/150‑1 (MQ=255)
tACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTGCGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCt                                                                                                                                                       <  1:4396402/150‑1 (MQ=255)
  cTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTgg                                                                                                                                                     <  2:2174591/150‑1 (MQ=255)
   tGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGt                                                                                                                                                    <  2:58830/150‑1 (MQ=255)
    ggCCGAAGCGTCGTTTCGGAGAGGGATGCTAAGGCTTGGCGGCCCGTGGACCTAGAGCCGCAGGGTGAGTTTGTTGGCCAAATTGAGGGGGTTTGGCCAAATAGCTTCGCGGTTGAACCCGCTCCTAAAAGGGAATGTGTATCCCTGGTa                                                                                                                                                   <  1:1080910/150‑1 (MQ=255)
    ggCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTa                                                                                                                                                   <  2:5626470/150‑1 (MQ=255)
     gCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAg                                                                                                                                                  <  2:1346158/150‑1 (MQ=255)
     gCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAg                                                                                                                                                  <  2:3140912/150‑1 (MQ=255)
     gCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCCCGCCTACAAGGGCATGTGTATACCAGGTAg                                                                                                                                                  >  1:4653906/1‑150 (MQ=255)
       cGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGGCTGTGTATCCCGGGTAGGa                                                                                                                                                >  2:3601551/1‑150 (MQ=255)
       cGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGGGTACCCGCGCCGACAACGGCCAGTGGATCCCgggggggg                                                                                                                                                >  1:1717877/1‑145 (MQ=255)
         aaGCGTCGTATCGGAGAGGGATGCTAACGCATGGTGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGc                                                                                                                                              <  2:4315148/150‑1 (MQ=255)
         aaGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGc                                                                                                                                              <  2:1707347/150‑1 (MQ=255)
         aaGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGCCTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGc                                                                                                                                              <  1:1480521/150‑1 (MQ=255)
           gCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCgg                                                                                                                                            <  2:3844005/150‑1 (MQ=255)
           gCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCgg                                                                                                                                            <  2:5570820/150‑1 (MQ=255)
           gCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCgg                                                                                                                                            <  1:4096642/150‑1 (MQ=255)
            cgtcgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCggg                                                                                                                                           <  2:4026317/150‑1 (MQ=255)
            cgtcgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCggg                                                                                                                                           <  2:2842026/150‑1 (MQ=255)
              tcgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCACCAACAAGGGCCGGTGTATCCCGGGGAGGGGCGGGtt                                                                                                                                         >  2:1211459/1‑150 (MQ=255)
                gtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGTACCCCCGCCTCCAAGGGCAGGGGTATCCCGGGGAGGGGCGGGGTcc                                                                                                                                       >  2:1859955/1‑149 (MQ=255)
                 tATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGTACCCCCGCCTACAAGGGGCGGTGTATCCCGGGGGGGGGCggggtgac                                                                                                                                      >  1:1247225/1‑145 (MQ=255)
                 tATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGTACCCCCGCCTACAAGGGCAAGTGTATCCCGGGTAGGAGCGGGTTGAc                                                                                                                                      >  1:2733355/1‑150 (MQ=255)
                     ggAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCAACAAGGGCAAGTGTATCCCGGGGATGAGCGGGTTCAccccc                                                                                                                                  >  2:1237739/1‑148 (MQ=255)
                           ggATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAAACCGCTCCAACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAagag                                                                                                                            >  2:817537/1‑150 (MQ=255)
                             aTGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGGGTTACCGCTGCTTAAATGGGGTGTGTTTGGCGGGTTGGTGGGGGTTGAACCGCGAAGTggg                                                                                                                          >  1:2181713/1‑149 (MQ=255)
                                 tAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAAACCGCTCCTACAAGGGCAAGTGTATCCCGGGGAGGAGCGGGTTCACCCGCGAAGAGGCCCgg                                                                                                                      >  1:5075908/1‑150 (MQ=255)
                                  aaCGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCCCTCCGAACACGGCCTGTGTATCCCGGGTAGGTGCGGGTTCACCCCCGCAGAGGCCCggg                                                                                                                     >  2:1947904/1‑149 (MQ=255)
                                  aaCGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGGGTAACCCCCCCAAAAAGGGCCTGTGTATACCAGGTTGGGGCGGGTTGACCCCCCCAGAGGccccgg                                                                                                                     >  1:1592836/1‑147 (MQ=255)
                                       aTGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGTACCCCCGCCAACCAGGGCCTGGGTATCCCGGGTGGGAGCGGGTTACCCCGCGCAGAGGCCCGGGCAAgc                                                                                                                >  1:925304/1‑150 (MQ=255)
                                                  tGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCCCGCCTACAAGGGCCTGGGTATCCCTGGGAGGGGCGGGTTCACCCGCGCAGAGGCCCGGGCCTGCGCCCCGGAggg                                                                                                     >  2:3297071/1‑150 (MQ=255)
                                                             ccGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTATGCCAAAAAGCTTCGCGGGTGAAACAGCTACAACCAGGGCATGTGTAAACCTGGGAGGGGCGGGTTCAACCGCGAAGAAGCCCCGTCATGCGCCCCCGAGTGCGGGGTCAtag                                                                                          >  1:5116812/1‑148 (MQ=255)
                                                                ccgggggACTTGGTTGCCACAATTGCGGGGGTTCGGCCAAAACGCTTCGGGGTTGAACCCGCTCCAACACGGGAATGTGTAGCCCTGGAAGGCGCGGGTGCCCCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCgggg                                                                                       <  2:3767556/148‑1 (MQ=255)
                                                                cAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGTGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCgggg                                                                                       <  2:3088571/150‑1 (MQ=255)
                                                                 aGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGTAACCCCGACGAAAAAGGGCTGTGTATCCCAGGTGGGTGCGGGTTCACCCCCGGAGAGGCCCGGGGAAGCGCCCCCGAGGGGGGGGTCATAggggg                                                                                      >  2:36802/1‑149 (MQ=255)
                                                                   ggggACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACACCCACCAACAAGGGCATGTGTATCCCAGGTAGGAGCCGGTTCACCCGCGAAGAGGCCCGGTCAAGCGCCCCCTAGGGCCGGGTCAACGGGgcgc                                                                                    >  2:1664568/1‑150 (MQ=255)
                                                                     ggACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCCCTCCAACAACGGCCAGTGTATCCCGGGTTGGAGCGGGTTGACCCCCGTAGAGGCCCGGTCATGCGCCCCCTAGGGCGGGGTCAAAGGGGCGCCg                                                                                  >  2:1530558/1‑150 (MQ=255)
                                                                           tgttgGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAAccgc                                                                            <  2:1259137/150‑1 (MQ=255)
                                                                             ttgGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGTACCCGCTGCTTCAAGGGGATGTGTATGCCTGGGTGGTGGGGGTTCTCCCGCGGAGTGGCCCGGTCATTCGCCCCGTAGGGGGGGGTGCTCGGGGGGCCGAAccgccg                                                                          >  2:1055284/1‑150 (MQ=255)
                                                                             ttgGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAAccgccg                                                                          <  2:5494298/150‑1 (MQ=255)
                                                                                 ccAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGaa                                                                      >  2:4686466/1‑150 (MQ=255)
                                                                                  cAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCCCTCCTACAAGGGCCTGTGTATCCCGGGTAGGCGCGGGGTCACCCGCGCAGAGGCCCGGTCATGCGCCCCCTAGGGCGGGTTCATCGGGGCGCCCAACCCCCGCGAAc                                                                     >  2:5411402/1‑150 (MQ=255)
                                                                                           ggggTTAGGCCAAAAAGCTTCGCGGGTGTACCCGCTCCTAAAATGGGATGTGTATGCCTGGTTTGTGCGGGTTGAGCCGCGAAGAGGGCCGGTCATGCGCCCCGTATGGGGGGTTGATGGGGGCGCCGTACCGCCGCGAACAGAACCggt                                                            >  2:2949185/1‑148 (MQ=255)
                                                                                                 aGGCCAAAAAGCTTCGCGGGGGAACCCCCTCCTACAAGGGCCTGGGGATACCGGGGAGGAGCGGGTTCACCCGCGCAGAGGCCCGGGCATGCGCCCCGGAGGGCGGGTTCATCGGGGCGCCGAACCGCCCCGAACACACCCCCTCAAgcg                                                      >  2:3386166/1‑150 (MQ=255)
                                                                                                  ggCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACACGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAgcgc                                                     <  2:5302004/150‑1 (MQ=255)
                                                                                                     cAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGt                                                                                                                                                    <  2:3233918/52‑1 (MQ=255)
                                                                                                     cAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGt                                                                                                                                                    >  1:3233918/1‑52 (MQ=255)
                                                                                                        acaGCTTCGCGGTTGAACCCGCTCCTACAAGGGCATGTGTATCCCGGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCcgacga                                               <  2:5184501/148‑1 (MQ=255)
                                                                                                        aaaGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCcgacga                                               <  2:5592324/150‑1 (MQ=255)
                                                                                                             ttCGCGGGTGAACCCGCTCCTACAAGGGCCTGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGAGCAAGCGCCGACGAGGCTc                                          >  2:4902799/1‑150 (MQ=255)
                                                                                                                    gTGAACCCGCTCCTCCATGGGCTTGTGTACCCCGGGTTGGTGCGGTTACACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGc                                   <  1:5002981/150‑1 (MQ=255)
                                                                                                                     tGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGcc                                  >  2:4116977/1‑150 (MQ=255)
                                                                                                                     gtcaccccGCTCCTACACGGGCTTGTGTACCGGGGGTTGGTGGGGGTCCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGc                                   <  1:4943487/145‑1 (MQ=255)
                                                                                                                        aaCCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTg                                >  2:4981505/1‑150 (MQ=255)
                                                                                                                         aCCCGCCCCAACACGGGCTTGTTTAGCCCTGGTTGGTGGGGTTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGc                               <  1:3984564/150‑1 (MQ=255)
                                                                                                                          cccGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCg                              >  1:3982330/1‑150 (MQ=255)
                                                                                                                          cccGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCg                              >  2:3694133/1‑150 (MQ=255)
                                                                                                                          cccGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCAGCGGGGCGCCGACCCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCg                              >  1:2096391/1‑150 (MQ=255)
                                                                                                                           ccGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGt                             >  1:3916140/1‑150 (MQ=255)
                                                                                                                           ccGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGt                             >  2:4514057/1‑150 (MQ=255)
                                                                                                                           ccGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGt                             >  1:2010716/1‑150 (MQ=255)
                                                                                                                           ccGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGt                             >  2:966152/1‑150 (MQ=255)
                                                                                                                               tCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTc                         >  2:1564668/1‑150 (MQ=255)
                                                                                                                                ccTACTTGGGCTTGTGTATCCGGGGTTGTGGGGGGTTCCCCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCa                        <  1:3030732/150‑1 (MQ=255)
                                                                                                                                ccTACACGGGCAGGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCa                        <  2:2656309/150‑1 (MQ=255)
                                                                                                                                 cTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAg                       >  2:4836393/1‑150 (MQ=255)
                                                                                                                                 aaactcgggCTTGTTTAGCCCTGGTTGTCGGGGTTCCCCCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAg                       <  1:2558563/144‑1 (MQ=255)
                                                                                                                                  tACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAgg                      >  1:3830780/1‑150 (MQ=255)
                                                                                                                                  tACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAgg                      >  2:2741794/1‑150 (MQ=255)
                                                                                                                                  tACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAgg                      >  1:2885302/1‑150 (MQ=255)
                                                                                                                                  tACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAgg                      >  1:3554331/1‑150 (MQ=255)
                                                                                                                                  tACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAgg                      >  2:9526/1‑150 (MQ=255)
                                                                                                                                   aCAAGGGCATGTGTATCCCTGGTAGTAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAggg                     >  1:1679478/1‑150 (MQ=255)
                                                                                                                                   aCAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAggg                     >  1:3467397/1‑150 (MQ=255)
                                                                                                                                   aCAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAggg                     >  1:5517839/1‑150 (MQ=255)
                                                                                                                                   aCAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAggg                     >  1:2651543/1‑150 (MQ=255)
                                                                                                                                    cAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGt                    >  2:103535/1‑150 (MQ=255)
                                                                                                                                     aaGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTg                   >  1:4865179/1‑150 (MQ=255)
                                                                                                                                     aaGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTg                   >  2:2305106/1‑150 (MQ=255)
                                                                                                                                      aGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTg                                     >  2:2265784/1‑131 (MQ=255)
                                                                                                                                        ggCTTGTTTATCCCTGGTTGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCaa                <  1:2192151/150‑1 (MQ=255)
                                                                                                                                         gCATGTGTATCCCTGGTTGGAGCGGTTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAAc               <  2:158113/150‑1 (MQ=255)
                                                                                                                                           aTGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACgg             >  2:2483130/1‑150 (MQ=255)
                                                                                                                                            tgtgCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGc            <  2:2368000/150‑1 (MQ=255)
                                                                                                                                               gtATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAAc         >  1:5567885/1‑150 (MQ=255)
                                                                                                                                                tATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCACGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACa        >  1:227033/1‑150 (MQ=255)
                                                                                                                                                 aTCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAg       >  2:617757/1‑150 (MQ=255)
                                                                                                                                                 aTCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAg       >  1:2703107/1‑150 (MQ=255)
                                                                                                                                                  tCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgc      >  1:1019975/1‑150 (MQ=255)
                                                                                                                                                  tCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgc      >  2:2131753/1‑150 (MQ=255)
                                                                                                                                                  gcccTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgc      >  1:798795/2‑150 (MQ=255)
                                                                                                                                                  cccgtGGTCGGCGCGGGTACACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgc      <  1:1211459/146‑1 (MQ=255)
                                                                                                                                                    ccTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcgg    >  1:5359615/1‑150 (MQ=255)
                                                                                                                                                    ccTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcgg    <  2:5094958/150‑1 (MQ=255)
                                                                                                                                                     cTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcggc   >  1:4962355/1‑150 (MQ=255)
                                                                                                                                                     cTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcggc   >  1:4449678/1‑150 (MQ=255)
                                                                                                                                                     cTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcggc   >  2:4007724/1‑150 (MQ=255)
                                                                                                                                                      tGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcggcg  >  2:463946/1‑150 (MQ=255)
                                                                                                                                                      tGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcggcg  >  1:2350770/1‑150 (MQ=255)
                                                                                                                                                      tGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcggcg  >  1:5289793/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
TACTGGCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAGCGGCG  >  NC_002947/5729157‑5729455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: