| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,902,775 | A→G | 17.5% | intergenic (‑170/+64) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,902,775 | 0 | A | G | 17.5% | 447.7 / 73.9 | 192 | intergenic (‑170/+64) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base A (71/82); new base G (14/19); total (86/106) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.90e-01 | |||||||||||
Only 100 of 194 total aligned reads displayed.
GGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCAC > NC_002947/5902626‑5902922 | gggCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATa < 2:3920143/150‑1 (MQ=255) gcgcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACg < 2:1752170/150‑1 (MQ=255) gcgcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACg < 2:5042435/150‑1 (MQ=255) cgcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACgg > 2:2409732/1‑150 (MQ=255) cgcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACgg < 2:5519072/150‑1 (MQ=255) gcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACggt < 2:3763757/150‑1 (MQ=255) gcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACACGCGAATACggt > 2:3835269/1‑150 (MQ=255) ccGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACggtg < 2:4036005/150‑1 (MQ=255) ccGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCAGCGAATACggtg < 2:4813701/150‑1 (MQ=255) ggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTc < 1:1592312/150‑1 (MQ=255) ggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTc < 1:775944/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGAt > 2:4819608/1‑150 (MQ=255) agGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGc < 2:5406169/150‑1 (MQ=255) gTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCAc < 1:4011598/150‑1 (MQ=255) gTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCCCGAAAACCGTGGTCGATGCAc > 1:3481797/1‑150 (MQ=255) gTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATCTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCAc > 2:2968182/1‑150 (MQ=255) ttGAAGGGGTTTTGAGCCTGGATTGAGTGCAATAGTAGTGAGGCGGGTTTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCa < 2:5117121/150‑1 (MQ=255) tGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCAt < 2:317249/150‑1 (MQ=255) aaGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCg > 1:3215772/1‑150 (MQ=255) aGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCgt < 2:2026149/150‑2 (MQ=255) aGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGc > 1:2029247/1‑150 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCa < 2:2755783/150‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc < 2:2589661/150‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc < 2:3468783/150‑1 (MQ=255) ttcgcgcCTGTCTTGAGGGCAATAGGAGTGAGGCGGGATTAATCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc < 1:4195911/147‑1 (MQ=255) tgtGCGCCTGGCCTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAATAGAACACGCCTCTGGTAGGAGC‑GGG‑TTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgcg < 1:93864/148‑1 (MQ=25) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgcg < 1:2293460/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgcg < 1:4821826/150‑1 (MQ=37) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGTCCACCGTATTCGCgg < 1:432777/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:4471994/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:2304102/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:3936417/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:4252241/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:3749400/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:2536102/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:792766/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:5022532/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:5070668/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:3877655/150‑1 (MQ=25) agcgcCTGGATTTAGGTCAATAGTAGTGAGGCGGGATTATACTAAAAAATACTGATTAAGAAATTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:3616839/149‑1 (MQ=38) gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGGGGTCGATGCAACATCGCAGTCGCGGGTa > 2:1384762/1‑150 (MQ=255) gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGGTTAACCCCGAAAAACGTGGTGGATTCAACAACACAATCGCgggga > 1:2390178/1‑148 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAc < 1:3426713/150‑1 (MQ=255) cTTGAGGGCAATAGTAGTGCGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCg < 1:2002779/150‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTTACCCCGCAAAACGTGGTCGATGCACCAACGCAATCGCGGGTAAAccccc > 1:1181567/1‑148 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:5554325/140‑1 (MQ=25) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGc > 2:4095355/1‑150 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATAATGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGGTTACCCGCGGCTTAGGTGGTCGATGCACCCTCGCATTCGCGGGTGAACCCGc > 1:5523496/1‑150 (MQ=255) gAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCCCGAAAACGGTGGTCGATGCACCATCGCAATAGCGGGTAAACCCGCTc > 1:2710598/1‑150 (MQ=255) gtagtGAGGCGGGATTATTCTTAAAAATACTGTTAAAGAATTTTTATATAACCATTTACGAGAACACGCCTCTGGTAGGAGC‑GGTTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgggg < 2:3559448/150‑1 (MQ=255) tagcgcggCGGGATTATTCTTAAAAATACGGTTAAAGAATTTTTATATAACCATTTAAGCCACCCCGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGc < 1:4125089/144‑1 (MQ=37) agtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGGTTTCCCGCGCAAAACGTGGGGGGTGGACCCGCGCCGTAGCGGGGGAACCCCCGCCAACCAGGGGcc > 1:2460812/1‑150 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGc < 1:4977473/112‑1 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGc > 2:4977473/1‑112 (MQ=255) gggTTTTTTCTTAAAAATCCTGTTTAAGATTTTTTATATCACCATTTAAGAGAACACGCCTCTGGTCGGAGG‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCTTTCGGGGGTAACCCCGCTCCTACCAGGGGCCATATGGGc < 2:1980103/150‑1 (MQ=255) tCTTAAAAATACTGTTTAACAATTTTTATATAACAATTTAACAGAACACGCCTCTGGTTGGCGC‑GGTTTTACCCGCGAATAGGTTGGTCGATGCACCAGCGCATTCGCGGTTAACCCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGc < 1:3176407/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTTAACC‑CGAAAAAGGTGGTGGGTTCACCAAAGCATAAGCCGGTGAAAACCCGCCCACCACGGGCCAAAATGGGCGTCAGGCgt > 1:2525314/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGCTGCACCAACGCAATCGCGGGTAAACCCGCTCCAACCACGGGCCCGAAGGGCCATCAGGCgt > 2:1860644/1‑150 (MQ=38) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCgt > 2:3231012/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCCCCAAAAAGGTGGTCGATGCACCCGAGCAATCGCGGGTAAAACCGCTCCTAACAGGGGCCCTAAGGGCCGGCAGGCgt > 1:3111045/1‑150 (MQ=255) aaaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATAGCATTAGCGGGTAAAACCGCACCTACCAGGGGCCAAATGGGCCTTCAGGCGTGttt > 2:1674394/1‑150 (MQ=39) tACTGTATAAGAATTTTTAAATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTg < 2:3668812/150‑1 (MQ=255) actttatAAAAATTTTTATATAACCATTTAAGACAACACGCCTCTGGTAGGAGC‑GGTTTTACCCGCTAATACGGTGGTCCATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGc < 1:3258584/144‑1 (MQ=37) aCTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGGGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGc < 2:4897655/150‑1 (MQ=255) tAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑CGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcg > 2:623027/1‑150 (MQ=255) aaGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgc < 2:5348462/91‑1 (MQ=14) aaGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgc > 1:5348462/1‑91 (MQ=14) taaTTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCgg < 2:2060152/149‑1 (MQ=255) ttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg < 2:2300686/150‑1 (MQ=255) atataACCATTTAAGCGAACACGCCTCGGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa < 2:2846264/150‑1 (MQ=255) aaCCATTTAAGAGACCCCGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 2:1572131/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 2:1755800/150‑1 (MQ=255) aTTTAAGACAACACGCCTGTGGTCGGCGG‑GGTTTTACCGGCGAATCGGGTGTTCGATCCACCATCGCTTGCGCGGGAAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCa < 1:3343081/150‑1 (MQ=255) agagAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTAc < 2:1819594/150‑1 (MQ=255) agagAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTAc < 2:4454146/150‑1 (MQ=255) agaACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGGGGTCGGTGCACCCTCGCAGTCGCGGGTAAACCCCCTCCGACCAGGGGCCCGAAGGGCCGTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCCCGGACAg > 1:5578186/1‑150 (MQ=37) acGCCTCTGGTAGGAGC‑GGGTTTACCCGCGCATACGGGGGTCGATGCACCATCGCAATCGCGGGGAAACCCGCGCCGACCAGGGGCCCTATGGGCCGTCCGGCGGGTTTCTGCGGCGCGCGGCGCGTGTTCCAGGCCCCGTCCAGCGCCg > 2:61223/1‑150 (MQ=25) gCCTCTGGTAGGAGC‑GGGGTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCGCCTACCCGGGGCCCGATGGGCCGTCAGGCGGGTTTCTGCGGCTCGCGGCTCGTGTACCAGGCCCCGTACCGCGCCGGc > 2:3504390/1‑150 (MQ=37) gAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCGTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagcag > 2:390201/1‑150 (MQ=255) aGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 2:4639802/150‑1 (MQ=255) gC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCg > 2:705095/1‑150 (MQ=255) c‑GGGTTTACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCGCGGGTAACCCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGt < 2:585408/150‑1 (MQ=255) gTTTACCCGCGAATAGGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAg < 2:1107052/150‑1 (MQ=255) aCCCGCTAATACGTTGTTCTATGAACAATCGCATTCGCGTTAAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGATTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAg < 2:2417210/150‑1 (MQ=255) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:5274545/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:5100194/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:2785878/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCAGATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1990063/1‑150 (MQ=25) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg > 1:2849392/1‑109 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:111441/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1534412/1‑150 (MQ=255) cgcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:5474697/1‑150 (MQ=37) cgcgAATGCGATGGTGAATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:5500787/1‑150 (MQ=25) cgcgAATCGGGTGGTCTTTGCACCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 1:3835269/150‑1 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 2:5230021/150‑1 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 1:2117043/1‑150 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 2:3552192/150‑1 (MQ=255) gcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:2186466/1‑150 (MQ=37) gcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa > 1:1030181/1‑103 (MQ=255) gcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:2703285/1‑150 (MQ=255) | GGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCAC > NC_002947/5902626‑5902922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |