| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,902,783 | C→G | 21.0% | intergenic (‑178/+56) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,902,783 | 0 | C | G | 21.0% | 378.6 / 100.8 | 176 | intergenic (‑178/+56) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base C (66/72); new base G (18/19); total (85/91) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.01e-01 | |||||||||||
Only 100 of 178 total aligned reads displayed.
GGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGA > NC_002947/5902634‑5902927 | ggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTc < 1:1592312/150‑1 (MQ=255)ggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTc < 1:775944/150‑1 (MQ=255) cAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCGCGAATAAGGTGGTCGa > 1:595289/1‑150 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGAt > 2:4819608/1‑150 (MQ=255) agGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGc < 2:5406169/150‑1 (MQ=255) agGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCGCGAAAAAGGTGGTCGATGc > 1:3849186/1‑150 (MQ=255) ttGAAGGGGTTTTGAGCCTGGATTGAGTGCAATAGTAGTGAGGCGGGTTTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCa < 2:5117121/150‑1 (MQ=255) tGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCAt < 2:317249/150‑1 (MQ=255) aaGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCg > 1:3215772/1‑150 (MQ=255) aaGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCGCGAATAAGGTGGTCGATGCACCAtag > 1:395053/1‑148 (MQ=255) aGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCgt < 2:2026149/150‑2 (MQ=255) aGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGc > 1:2029247/1‑150 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTTAACGCGAATACGGTGGTGGATTCACCaaagca > 1:4045392/1‑145 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCa < 2:2755783/150‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcg‑c < 2:2589661/150‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcg‑c < 2:3468783/150‑1 (MQ=255) ttcgcgcCTGTCTTGAGGGCAATAGGAGTGAGGCGGGATTAATCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcg‑c < 1:4195911/147‑1 (MQ=255) tgtGCGCCTGGCCTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAATAGAACACGCCTCTGGTAGGAGC‑GGG‑TTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcg‑cg < 1:93864/148‑1 (MQ=25) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcg‑cg < 1:2293460/150‑1 (MQ=37) tGCGCCTGGCTTGAGGGCAATAGTCGTGAGGCGGGATTATTCTTAAAAATACTGTTTAATATTTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑Cgg < 1:3821530/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGTCCACCGTATTCG‑Cgg < 1:432777/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCG‑Cgg < 2:4252241/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCG‑Cgg < 1:3749212/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCG‑Cgg < 1:4471994/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑Cgg < 2:792766/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑Cgg < 2:18729/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑Cgg < 2:2029247/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑Cgg < 1:2502956/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑Cgg < 1:5022532/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑Cgg < 1:4190226/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCG‑Cgg < 2:5552983/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCG‑Cgg < 1:3877655/150‑1 (MQ=25) agcgcCTGGATTTAGGTCAATAGTAGTGAGGCGGGATTATACTAAAAAATACTGATTAAGAAATTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑Cgg < 2:3616839/149‑1 (MQ=38) ggCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCG‑CGGGTAAAcc < 2:3818138/150‑1 (MQ=25) cTTGAGGGCAATAGTAGTGCGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCg < 1:2002779/150‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTTACCCCGCAAAACGTGGTCGATGCACCAACGCAATCG‑CGGGTAAAccccc > 1:1181567/1‑148 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGc > 2:4095355/1‑150 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATAATGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGGTTACCCGCGGCTTAGGTGGTCGATGCACCCTCGCATTCG‑CGGGTGAACCCGc > 1:5523496/1‑150 (MQ=255) gAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCCCGAAAACGGTGGTCGATGCACCATCGCAATAG‑CGGGTAAACCCGCTc > 1:2710598/1‑150 (MQ=255) aGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCCCGAAAACGGGGGTCGCTGCACCCACGCAATAGCCGGGAAAAccccgcc > 1:2436347/1‑146 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAgg > 2:4968366/1‑150 (MQ=255) attagtGAGGCGGTATTATTCTTAAAAATACTTTTTAATATTTTTTATATAACCATTTAAGAGAACACGCCTGTGGTAGGAGC‑GGGTTTACCCGCTAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAggg < 2:2382187/148‑1 (MQ=38) gtagtGAGGCGGGATTATTCTTAAAAATACTGTTAAAGAATTTTTATATAACCATTTACGAGAACACGCCTCTGGTAGGAGC‑GGTTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAgggg < 2:3559448/150‑1 (MQ=255) tagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGc > 2:402506/1‑150 (MQ=255) tagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCG‑CGGGTAAACCCGCTCCTACCAGAGGc < 2:4544104/150‑1 (MQ=18) tCTTAAAAATACTGTTTAACAATTTTTATATAACAATTTAACAGAACACGCCTCTGGTTGGCGC‑GGTTTTACCCGCGAATAGGTTGGTCGATGCACCAGCGCATTCG‑CGGTTAACCCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGc < 1:3176407/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTTAACC‑CGAAAAAGGTGGTGGGTTCACCAAAGCATAAG‑CCGGTGAAAACCCGCCCACCACGGGCCAAAATGGGCGTCAGGCgt > 1:2525314/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCgt > 2:3231012/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCgt > 1:5157406/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCCAAAACGGTGGTCGATGCACCATCCCATTCG‑CGGGTAAACCCCCGCCAACCAGGGGCCCGATGGGCCGTCAGGCgt > 2:1860568/1‑150 (MQ=38) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCCCCAAAAAGGTGGTCGATGCACCCGAGCAATCG‑CGGGTAAAACCGCTCCTAACAGGGGCCCTAAGGGCCGGCAGGCgt > 1:3111045/1‑150 (MQ=255) aaaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATAGCATTAG‑CGGGTAAAACCGCACCTACCAGGGGCCAAATGGGCCTTCAGGCGTGttt > 2:1674394/1‑150 (MQ=39) tACTGTATAAGAATTTTTAAATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTg < 2:3668812/150‑1 (MQ=255) actttatAAAAATTTTTATATAACCATTTAAGACAACACGCCTCTGGTAGGAGC‑GGTTTTACCCGCTAATACGGTGGTCCATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGc < 1:3258584/144‑1 (MQ=37) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCt > 1:2300686/1‑150 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATAAGGTGGTCGATGCACCATCGCAATCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCt > 2:4897337/1‑150 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCCCGAAAACGGTGGTCGTTGCAACAAAGCAATAG‑CCGGTAAAAACCCACCATCAACGGGCCATATGGGCCATCAGGCGTGTTTGTGGGGCt > 1:4938831/1‑150 (MQ=255) tAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑CGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcg > 2:623027/1‑150 (MQ=255) aaGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcg‑c < 2:5348462/91‑1 (MQ=14) tttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCtt < 2:2121048/150‑1 (MQ=255) atataACCATTTAAGCGAACACGCCTCGGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa < 2:2846264/150‑1 (MQ=255) aaCCATTTAAGAGACCCCGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 2:1572131/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 2:1755800/150‑1 (MQ=255) aCCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCGTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAgg > 2:5045226/1‑150 (MQ=255) aTTTAAGACAACACGCCTGTGGTCGGCGG‑GGTTTTACCGGCGAATCGGGTGTTCGATCCACCATCGCTTGCG‑CGGGAAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCa < 1:3343081/150‑1 (MQ=255) agagAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTAc < 2:1819594/150‑1 (MQ=255) agaACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGGGGTCGGTGCACCCTCGCAGTCG‑CGGGTAAACCCCCTCCGACCAGGGGCCCGAAGGGCCGTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCCCGGACAg > 1:5578186/1‑150 (MQ=37) acaaCACGCCTCTGGTTGGAGC‑GGTTTTACCCGCGAATAGGGTGGTCGATGCACCATCTCATTCG‑GGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAg < 2:1528371/148‑1 (MQ=39) acGCCTCTGGTAGGAGC‑GGGTTTACCCGCGCATACGGGGGTCGATGCACCATCGCAATCG‑CGGGGAAACCCGCGCCGACCAGGGGCCCTATGGGCCGTCCGGCGGGTTTCTGCGGCGCGCGGCGCGTGTTCCAGGCCCCGTCCAGCGCCg > 2:61223/1‑150 (MQ=25) cGCCTCTGGTAGGAGC‑GGTTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATGCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCgg < 1:3368004/150‑1 (MQ=255) gCCTCTGGTAGGAGC‑GGGGTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCGCCTACCCGGGGCCCGATGGGCCGTCAGGCGGGTTTCTGCGGCTCGCGGCTCGTGTACCAGGCCCCGTACCGCGCCGGc > 2:3504390/1‑150 (MQ=37) ccctGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCAGATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg > 2:5104367/3‑150 (MQ=18) gAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagcag < 1:2333712/150‑1 (MQ=255) gAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCGTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagcag > 2:390201/1‑150 (MQ=255) gC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCg > 2:705095/1‑150 (MQ=255) gggTTTACCCGCGAATCCGGTGGTCGATGCACCATCGCCTCCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTc < 2:56254/150‑1 (MQ=255) gTTTACCCGCGAATAGGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAg < 2:1107052/150‑1 (MQ=255) tACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCaa > 2:601998/1‑150 (MQ=255) aCCCGCTAATACGTTGTTCTATGAACAATCGCATTCG‑CGTTAAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGATTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAg < 2:2417210/150‑1 (MQ=255) ccGCGAATGCGATGGTGCATCGACCACCGTATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:2785878/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:5100116/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:5274567/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCAGATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1990063/1‑150 (MQ=25) ccGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg > 1:2849392/1‑109 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 2:2849392/109‑1 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:3472373/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:111441/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1534412/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:4360139/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:4805656/1‑150 (MQ=255) cgcgAATGCGATGGTGCATCGACCACCGTATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:5474697/1‑150 (MQ=37) cgcgAATGCGATGGTGAATCGACCACCGTATTCG‑CGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:5500787/1‑150 (MQ=25) cgcgAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 2:5230021/150‑1 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 1:2117043/1‑150 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 2:3552192/150‑1 (MQ=255) gcgAATGCGATGGTGCATCGACCACCGTATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:2186466/1‑150 (MQ=37) gcgAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa > 1:1030181/1‑103 (MQ=255) gcgAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:2703285/1‑150 (MQ=255) aTACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCAc > 2:2542578/1‑150 (MQ=255) ggtggtCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 1:1665852/1‑150 (MQ=255) | GGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCG‑CGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGA > NC_002947/5902634‑5902927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |