| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,014,149 | T→C | 16.8% | intergenic (+41/+41) | norM → / ← PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,014,149 | 0 | T | C | 16.8% | 214.1 / 31.7 | 89 | intergenic (+41/+41) | norM/PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (41/33); new base C (6/9); total (47/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.43e-01 | |||||||||||
GCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGC > NC_002947/6014000‑6014293 | gcTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGAtt < 2:3102541/150‑1 (MQ=255) gggCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTgcgc < 2:5004999/150‑1 (MQ=255) gggCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGGTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTgcgc < 2:5004930/150‑1 (MQ=255) ggCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGcgcg < 1:214946/150‑1 (MQ=255) ggCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGcgcg < 1:214941/150‑1 (MQ=255) cTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGt < 2:3218623/150‑1 (MQ=255) cATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCt < 2:4643583/150‑1 (MQ=255) tgtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCtgt < 1:5320677/150‑1 (MQ=255) tgtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCtgt < 1:4267092/150‑1 (MQ=255) gtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCtgtg < 2:451322/150‑1 (MQ=255) gtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCtgtg < 2:451516/150‑1 (MQ=255) tgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTgg < 2:4135651/150‑1 (MQ=255) tgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTgg < 2:4135593/150‑1 (MQ=255) tgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTgg < 2:1130509/150‑1 (MQ=255) tgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTgg < 1:1733028/150‑1 (MQ=255) tgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTgg < 2:1792321/150‑1 (MQ=255) gcggcgGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCCCGCCCCCTCCCCCA‑GGCATGCGCCGGCCCGGTggg > 1:4514590/1‑150 (MQ=255) cggcggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGa < 1:352022/150‑1 (MQ=255) cggcggGGGCGCTGACCTTGGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGa < 2:2620085/150‑1 (MQ=255) gcggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGc < 2:3734667/150‑1 (MQ=255) cggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCg < 1:5091611/150‑1 (MQ=37) cggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCg < 1:5091378/150‑1 (MQ=37) ggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCgg < 2:1974056/150‑1 (MQ=37) ggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCgg < 1:5482428/150‑1 (MQ=37) ggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCgg < 1:1294938/150‑1 (MQ=37) ggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCgg < 2:4807750/150‑1 (MQ=255) tGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCGGGc < 1:4669145/150‑1 (MQ=25) gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGc > 2:2186052/1‑142 (MQ=255) gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGc < 1:2186052/142‑1 (MQ=255) gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGc < 1:1763515/150‑1 (MQ=255) gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGc < 1:195986/150‑1 (MQ=255) gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGc < 1:1763475/150‑1 (MQ=255) cTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCGGGCGTGcc < 2:2623720/150‑1 (MQ=25) cTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCGCGGTCCCTGTGGGAGCGGGCGTGcc < 1:582499/145‑1 (MQ=255) cTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGcc > 2:582499/1‑145 (MQ=255) ggtttGAGGGGCGTATGAAAGGGTTGTTGGGTACGGGGGGGTTTCTTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCGGCTCCCACAGGGACCGCGC‑ATTCCTGTGGGAGCGGGCGTGCCCGCGAAGAgg < 2:2129553/148‑1 (MQ=17) tttGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCGGGc > 1:2633105/1‑133 (MQ=25) tttGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCGGGc < 2:2633105/133‑1 (MQ=25) attGAGTGCCGGATTAAACGGTTTTTGGGTAAGGCGGGGGTTCGTACACAAGCTGCTGTTTCGCCCTGACTACCGGGCCTATTCGCGGCAACCCCCGATCCCACA‑GGATTGCGCGGTCCCTGTGGTAGCGGGCGTCCCCGCGAAGAGGcc < 2:219876/149‑1 (MQ=255) aaCGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGGGCGGGCCTGCCCCCGAAGAGGCCCGAAAGGAcacccacc > 1:5545824/1‑150 (MQ=38) aaCGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTcc > 2:4136824/1‑150 (MQ=255) gttgGGTACGGCGGGGGTTCGTCCAGACGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCCCA‑GGTTTGCGCGGTCCCTGTGGGCGCGGGGGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTggc < 1:1847778/150‑1 (MQ=38) ttgGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTggcg < 2:1562165/150‑1 (MQ=255) ggTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCt < 1:3621152/83‑1 (MQ=255) ggTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCt > 2:3621152/1‑83 (MQ=255) gTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACC‑GGTTTGCGCGGTCCCTGTGGGAGGGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCaaa < 2:1938186/150‑1 (MQ=255) tttCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTcc > 2:4628325/1‑150 (MQ=255) cGGGCCTCTTCTCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGt < 2:109970/150‑1 (MQ=255) tctTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGCAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTctgctg > 2:3200571/1‑150 (MQ=255) tctTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGGAGCAAATACGCCCTCAATTCCCCTATCGGTAGCGGTctgctg > 1:2255961/1‑150 (MQ=255) tctTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCGCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTctgctg > 2:357072/1‑150 (MQ=255) ttCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGCGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGGCCCCCTCCAACTGGCGGCCCGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGAc > 2:2773008/1‑150 (MQ=255) aCGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGcc > 2:3903171/1‑150 (MQ=255) gCCCGCTCCCACAGGGACCGCACAAT‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCtt > 2:238413/1‑150 (MQ=25) gCCCGCTCCCACAGGGACCGCACAAT‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCtt > 2:238610/1‑150 (MQ=25) ccGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGc > 1:224017/1‑150 (MQ=37) ccGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGc > 1:4522420/1‑150 (MQ=255) ccGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGc > 1:3710581/1‑150 (MQ=255) cGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCGATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCa > 2:2325973/1‑150 (MQ=25) cGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTCGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCa > 2:5387254/1‑150 (MQ=25) tCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTTGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCt > 2:4783560/1‑150 (MQ=255) ccACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTgg < 2:5545824/150‑1 (MQ=255) ccACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTgg > 1:1246352/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACCCCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 2:90337/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCCGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 1:164437/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCCGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 1:5329346/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 1:1041782/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 1:2340738/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 1:154588/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 1:3496673/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 1:3646870/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 2:405774/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 2:3872636/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 2:364058/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 2:1789074/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 1:154581/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGGAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 2:1788831/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTAGCGGCCAGGCGCCTGCAGCACATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 1:548875/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCCCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 1:1712292/1‑150 (MQ=255) caca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCCCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGt > 1:1712802/1‑150 (MQ=255) aca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCa > 2:2221269/1‑98 (MQ=255) aca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCa < 1:2221269/98‑1 (MQ=255) aca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGc < 1:2480526/142‑1 (MQ=255) aca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGc > 2:2480526/1‑142 (MQ=255) aca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTc > 1:2092824/1‑150 (MQ=255) aca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTc > 1:2093220/1‑150 (MQ=255) aca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTc > 2:5559531/1‑150 (MQ=255) aca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTc > 2:3379213/1‑150 (MQ=255) aca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTc > 2:3379134/1‑150 (MQ=255) a‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGc > 1:1804341/1‑150 (MQ=255) | GCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGC > NC_002947/6014000‑6014293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |