| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 550,552 | C→G | 5.7% | intergenic (+30/‑112) | tufB → / → rpsJ | elongation factor Tu‑B/30S ribosomal protein S10 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 550,552 | 0 | C | G | 5.7% | 882.2 / 32.1 | 262 | intergenic (+30/‑112) | tufB/rpsJ | elongation factor Tu‑B/30S ribosomal protein S10 |
| Reads supporting (aligned to +/- strand): ref base C (103/144); new base G (3/12); total (106/156) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.88e-01 | |||||||||||
Only 100 of 268 total aligned reads displayed.
AACATTCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTT > NC_002947/550403‑550700 | aacaTTCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTc > 2:2633005/1‑150 (MQ=255) aTTCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCACTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGc > 1:1574159/1‑150 (MQ=255) cAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCggg < 2:39552/150‑1 (MQ=255) aGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCgggg < 2:3233706/150‑1 (MQ=255) aTGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTGAGCGGGGG‑t < 2:235703/150‑1 (MQ=255) gACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑ttt < 1:3134806/150‑1 (MQ=255) aCTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑tttt < 1:4446548/150‑1 (MQ=255) aCTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑tttt < 1:2189172/150‑1 (MQ=255) cTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑ttttt < 2:3753105/150‑1 (MQ=255) tGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAAACCCCCGCTGAGCGGGGG‑ttttt < 2:3076231/150‑1 (MQ=255) tGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAAACCCCCGCTGAGCGGGGG‑ttttt < 2:2956958/150‑1 (MQ=255) gTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTGAGCGGGGG‑ttttttc < 1:2044363/150‑2 (MQ=255) gTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑ttttttt < 2:2321828/150‑1 (MQ=255) tACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTa < 2:5347064/150‑1 (MQ=255) ccTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTg < 1:4004071/150‑1 (MQ=255) ccTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTg > 2:738089/1‑150 (MQ=255) tGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTggg < 2:919378/150‑1 (MQ=255) gATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGt < 2:4029757/150‑1 (MQ=255) aTCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGtt < 2:536608/150‑1 (MQ=255) cAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGa > 1:3227968/1‑150 (MQ=255) aaGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGac > 2:302764/1‑150 (MQ=255) aaGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGac > 2:5257400/1‑150 (MQ=255) aaGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGac < 1:4174567/150‑1 (MQ=255) aaGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGac > 2:1045926/1‑150 (MQ=255) gACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGacac > 1:4252900/1‑150 (MQ=255) gACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGacac < 1:527197/150‑1 (MQ=255) aCCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAATCCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACt > 2:2386816/1‑150 (MQ=255) aCCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACt > 1:2564046/1‑150 (MQ=255) aCCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACt > 1:2884574/1‑150 (MQ=255) cATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTaa > 1:126846/1‑150 (MQ=255) aTCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTTATTGGGTTGACACTaa < 2:1229896/150‑1 (MQ=255) tCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGGGGCCAAAATCATCGCGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAAtt < 2:2195165/150‑1 (MQ=255) cAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTggg < 2:1061963/150‑1 (MQ=255) aaTGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTgggg < 1:398238/150‑1 (MQ=255) cGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCtata < 1:3909427/150‑1 (MQ=255) ggTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAg > 1:3743706/1‑150 (MQ=255) gcgcTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCa > 2:642532/1‑150 (MQ=255) cgcTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATccc < 2:1597528/150‑3 (MQ=255) cgcTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCAc < 1:4883894/150‑1 (MQ=255) cgcTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCAc < 2:1476180/150‑1 (MQ=255) gcTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACg > 1:1927630/1‑150 (MQ=255) ttCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGcc > 2:3651487/1‑150 (MQ=255) cTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGcctcct > 2:4539145/1‑150 (MQ=255) tATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCtt > 1:3852604/1‑150 (MQ=255) tATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCtt > 1:1103641/1‑150 (MQ=255) tATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCtt > 1:4041851/1‑150 (MQ=255) tATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCAGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACCCTAATTGGGGGCTGGTATAGAATCAAGACTCCtt > 1:739622/1‑150 (MQ=38) aTCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCttt < 1:1015651/150‑1 (MQ=255) cGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAg < 1:4555768/150‑1 (MQ=255) tGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCg > 1:2123302/1‑150 (MQ=255) aaGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCggg < 2:356400/150‑1 (MQ=255) gTCGTACCGTCGTCGCCGTCGTTGTGGACAAAATCATAGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCACCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGTGAGTCTATAGAATCACGCATCCTTTTAGCGGGCGTAGt < 2:5011161/150‑1 (MQ=255) gTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGt > 2:3551704/1‑150 (MQ=255) tCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCAATCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTATATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGtt < 1:3548658/150‑1 (MQ=255) ggCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAg > 1:2460299/1‑150 (MQ=255) gCGTTGTGGCCAAAATCCTCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCCGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGc < 2:4145098/150‑1 (MQ=255) gTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCt < 1:726754/150‑1 (MQ=255) ttGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑ATTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTg < 2:4519813/150‑1 (MQ=255) tgGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCt < 1:2946471/146‑1 (MQ=255) gCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACTCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTc > 1:2317994/1‑150 (MQ=255) gCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTc > 2:3107690/1‑150 (MQ=255) ccAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCt < 1:1756363/150‑1 (MQ=255) ccAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCt > 2:2805223/1‑150 (MQ=255) cAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGACCAGCCTGGAGTCTg > 1:5340767/1‑150 (MQ=255) cAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTg > 1:4511748/1‑150 (MQ=255) tcatcGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCtat < 2:4014883/87‑1 (MQ=255) tcatcGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATc > 1:964814/1‑150 (MQ=255) atcGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCa < 2:126846/150‑1 (MQ=255) tcGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGTG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCaa < 1:4695936/150‑1 (MQ=255) tcGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCaa > 1:142534/1‑150 (MQ=255) tcGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCaa > 1:5361871/1‑150 (MQ=255) gAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAAt < 2:1047445/150‑1 (MQ=255) tAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATg < 1:3347001/147‑1 (MQ=255) tAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATg > 2:3347001/1‑147 (MQ=255) tAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCaa < 1:4634933/150‑1 (MQ=255) tCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAAt > 2:5498917/1‑150 (MQ=255) aCTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCa < 2:4253524/150‑1 (MQ=255) aCTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTGTAGCGGGCGTCGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCa > 2:4777306/1‑150 (MQ=255) cTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAg > 1:5187050/1‑150 (MQ=255) tCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑‑TTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGCAATCCAATGCAAAATCAGCa > 2:4339070/1‑150 (MQ=255) gACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCaa > 1:4941595/1‑150 (MQ=255) cGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATc > 1:891636/1‑150 (MQ=255) gATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATcc > 1:5495502/1‑150 (MQ=255) caataaaaaaaaCCCCCGCTGAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATc > 1:1519423/7‑150 (MQ=255) ttG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGt > 1:2711870/1‑150 (MQ=255) g‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTAt > 1:1360260/1‑150 (MQ=255) aaaaaaCCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATc > 2:1496747/1‑150 (MQ=255) aaaaaaCCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATc > 2:826328/1‑150 (MQ=255) aaaaaCCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCa > 2:1789722/1‑150 (MQ=255) aaaaCCCCCGCTGAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAg > 1:1976735/1‑150 (MQ=255) aaaaCCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAg < 2:5097589/150‑1 (MQ=255) aaaCCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTGTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAgg > 2:1690373/1‑150 (MQ=255) ccccGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGa > 2:3566904/1‑150 (MQ=255) ccccGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGGCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCACATCCGTATCAGGTTGa > 2:4235307/1‑150 (MQ=255) cccgccccgcGGGGT‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGaa < 1:4375206/150‑1 (MQ=255) cccGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGaa < 1:1563904/150‑1 (MQ=255) cccGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGaa < 1:3070514/150‑1 (MQ=255) cccGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGaa > 2:2941383/1‑150 (MQ=255) ccGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAg > 2:2713187/1‑150 (MQ=255) cTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCt < 2:1421072/150‑1 (MQ=255) | AACATTCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTT > NC_002947/550403‑550700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |