| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,316,714 | T→A | 5.9% | intergenic (‑227/+51) | PP_1144 ← / ← rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,316,714 | 0 | T | A | 5.9% | 451.6 / 15.6 | 152 | intergenic (‑227/+51) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Reads supporting (aligned to +/- strand): ref base T (77/63); new base A (4/5); total (83/69) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.32e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.69e-01 | |||||||||||
Only 100 of 160 total aligned reads displayed.
GTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTC > NC_002947/1316565‑1316863 | aCTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTg < 2:893624/150‑1 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGAAGCAACCACAGCGGTGG‑ATGCCACCGGCGTTGcc > 2:5383880/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGTACCAACCACAGCGGGGG‑CTGCCACCCGCGTTGcc > 2:4224524/1‑150 (MQ=255) aGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGgt < 2:5057825/150‑1 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATCCACAGCGGGGG‑ATGCCACCGGCGTTGCCGGTGtta > 2:5250419/1‑149 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCAAAGCCGgtggca < 1:1346680/150‑4 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCAAAGCCGgtggca < 2:4246354/150‑4 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCAAGCATACACAGCGGGGG‑ATGCCACCCGCGTTGCCGGTGTTc > 2:2573597/1‑150 (MQ=255) ccTGACTAATGGAACAATGATTTATACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTcgc < 2:4789027/150‑1 (MQ=255) cTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCAAGCATCCACGGCGGTGG‑ATGCCACCCGCGTTGCCGGTGTTcgcg > 2:1787302/1‑150 (MQ=255) tGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCgg < 2:5014706/150‑1 (MQ=255) tGACTAATGGCAAAATTATTTCTACGATTTGTTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCgg < 1:2097593/150‑1 (MQ=255) aCTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGc < 2:1168224/150‑1 (MQ=255) tAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCAAGCAAACACAGCGGTGG‑TTGGCACCCGCGTTTCCGGGGGTggcgggcgg > 1:1841483/1‑149 (MQ=255) tGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGcc < 2:5521740/150‑1 (MQ=255) caATGATTTCTACGATTTGGTTATACCTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTc < 1:1265710/150‑1 (MQ=255) caATGATTTCTACGATTTGGTTATACCTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTc < 1:1457159/150‑1 (MQ=255) aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGACGCAACCAAAGCGGTGG‑AAGCCACCGGCGTTTCCGGTGTTGCCGGGCGTGCCCCCTcc > 2:5224100/1‑150 (MQ=255) aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTcc < 2:5139132/150‑1 (MQ=255) aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTcc < 2:4041474/150‑1 (MQ=255) gATTTGTTTATAACTCCATTCGCAGTTAGTAATAATTTTGGGGCCCTACTGCCTTCGTGTGGGAGGGGGCGAGCCCGCGACGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGgcgc < 1:3769771/150‑1 (MQ=25) aTTTGGTTATAACTCCAATCGCTGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCGGTGGGAGCGGGCGACCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGcgcg < 1:301211/150‑1 (MQ=255) tttGGTTATAACTCCAATCGCAGTGAGGACTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAAAATAAAAAGCGGTGG‑ATGCCACCCGCGTTGCCGGTGTTAGCGGGCGTGCCCGCAACCACAAAGGGCGCgg > 2:3856637/1‑150 (MQ=255) ttGGTTATACCACCAATGGCATTGTGTAATAATTTGGGGGCCACACGGCCTGCCTGGGGGCGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTGGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCggg < 1:3372796/150‑1 (MQ=21) ggTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGc < 2:3405821/150‑1 (MQ=255) gTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACAGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGcc > 2:1851907/1‑150 (MQ=255) tataACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTg < 2:5565646/150‑1 (MQ=255) ataACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGCAGCAAACACATCGGTGG‑GTGCCACCCGCGTTGCCGGTGTTGGCGGGCGGGCCCCCTCCCACAACGGGCGCGGGGCCTgc > 1:5568427/1‑150 (MQ=255) taACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAg < 1:5563089/134‑1 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGTACCATCCACAGCGGTGGTATG‑CACCGGCAGAGCCGGGGTTGGCGGGCGGGCCCGCTCCCACAACGGGCGCGGGGGCGgcgcgtg > 2:5259060/1‑147 (MQ=25) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCCTCCCCTGCGGTGG‑CTGCCACCCGCTTTGCCGGTGGTCGCGGGCGTGCCCGCTCCCACCCGGGGCGCGGGGCCTGCGCTag > 2:5470599/1‑150 (MQ=38) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAAACACAGCGGTGG‑ATGCCCCCCGCTTTTCCCGTGTTGGCGGGCGGGCCCCCACCCACAAGGGGCGCGGGGCCAgcccaag > 2:2183901/1‑145 (MQ=37) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCAACATACAAAGCCGGGG‑ATGCCACCCGCATTTCCCGGGTTAGCGGGGGGGCCCGCAACCACAAAGGGCCCCGGGCCCGCGCCag > 2:1477006/1‑150 (MQ=255) cAATCGCCGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcc < 1:3241660/150‑1 (MQ=255) cAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCgg > 1:4222103/1‑100 (MQ=255) aaccGCTGTGAGCAATAATTTGGGGGCCATACTGCCGGCGTGTGGGAGGGGGCGCGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcca < 1:2840061/147‑1 (MQ=21) aaTCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCAAGCATACACCGCGGTGG‑ATTCCACCCGCGTTGCCGGTGGTCGCGGGCGTGCCCCCTCCCACAAGGGGCGCGGGGCCGGCGCGagcca > 2:4347088/1‑150 (MQ=38) cAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGccac < 2:3529300/150‑1 (MQ=255) ggAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCAc < 2:1736998/150‑1 (MQ=255) gAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCAAGCATCCACTGCGGTGG‑ATGCCACCCGCTTTTCCGGGGTTAGCGGGCGTGCCCGCACCCACAAGGGGCGCGGGGCCTGCGCAAGCCAGCCACCAGCAcc > 2:5480270/1‑149 (MQ=38) aaTATATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCAcgc < 2:3107699/150‑1 (MQ=255) aaTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCAcgc < 2:3107464/150‑1 (MQ=255) aaTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAt < 1:2215492/150‑1 (MQ=255) ttgggggCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATgg < 2:3757048/147‑1 (MQ=255) gCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCa < 2:2171648/150‑1 (MQ=255) gCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCa < 2:3802545/150‑1 (MQ=255) ccTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAgg < 1:5347840/150‑1 (MQ=255) tAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTTCCGGTGTTAGCGGGCGTGCCCCCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCCCGCGAATGGCTTCCAGgcg > 2:5128566/1‑150 (MQ=255) tGCCTTCCTGTGGGAGCGGGCGAGCCCGCGTAGCATACACTGCGGTGG‑TTTCCACCCGCGTTGCCGGGGTTGGCGGGCGTGCCCGCACCCCCCAGGGGCGCGGGGCCGGCGCTATCCCGCCCCCACCCCGCGAATGGGGTCCCGgcgccc > 2:5392493/1‑148 (MQ=255) ttCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcg < 1:2176894/150‑1 (MQ=255) ccTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcggc < 1:1787302/150‑1 (MQ=255) cTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCAACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGcc < 2:1625829/150‑1 (MQ=255) tgtgGGAGCGGGCGAGCCCGCGAAGCAACCACTGCGGTGG‑ATGCCACCCGCGTTGCCGGGGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCGGCGCGAGCCAGCCACCCGCACGCGCATGGCGTCCAGGCGCCGGGCGGccg > 2:1294323/1‑149 (MQ=37) gAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTcc < 2:3681074/150‑1 (MQ=255) gCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAg < 1:2573597/150‑1 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTCGCCAGCCACCAGCACGCCAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGcctg > 2:3307898/1‑147 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAtt < 2:3656344/150‑1 (MQ=255) gAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGGGCGCGGGCGTGCCCGCTCCCACCCGGGGCGCGGGGCCTGCGCGAGCCAGCCACCAGCCCGCGCAGGGCTGCCAGGCGCCGGGCGGCCGGCTCCCGcctggc > 2:1406576/1‑145 (MQ=25) cccGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg < 1:4396171/150‑1 (MQ=255) cccGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg < 2:2877234/150‑1 (MQ=255) cccGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg > 2:4849587/1‑150 (MQ=255) ccGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg > 1:135640/1‑150 (MQ=255) ccGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg > 2:4685523/1‑150 (MQ=255) ccGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg > 1:1213886/1‑150 (MQ=255) ccGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg < 1:4482777/150‑1 (MQ=255) ccGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg > 1:3324186/1‑150 (MQ=255) ccGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg < 2:1927440/150‑1 (MQ=255) gcgAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc < 1:1772106/150‑1 (MQ=255) gAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCAt > 1:5066769/1‑150 (MQ=255) tggCATCCACCGCAGTGG‑ATGCTACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATc > 1:4949697/3‑150 (MQ=255) gCATCCACCGCAGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCtt > 2:2128647/1‑150 (MQ=255) cATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCCTCTTc > 1:292793/1‑150 (MQ=255) aTCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 2:4510665/1‑150 (MQ=255) aTCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 1:947271/1‑150 (MQ=255) aTCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 2:2571489/1‑150 (MQ=255) tCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc < 2:2820177/150‑1 (MQ=255) tCCACCGCAGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 2:811733/1‑150 (MQ=255) ccACCGCAGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgcg > 2:5092043/1‑150 (MQ=255) cACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc < 1:2104924/150‑1 (MQ=255) aCTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgcc > 2:386747/1‑150 (MQ=255) ccgcgaacACCGGCAAAGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTgcg > 2:4786706/8‑150 (MQ=255) cgcgaacACCGGCAAAGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTgcgc > 2:4132165/7‑150 (MQ=255) aTGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCGAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAGTGCCAGGCCATCTTCGCGCCGCTTGCGCAg < 2:5623588/150‑1 (MQ=255) acACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGc > 1:321184/2‑150 (MQ=255) cACCGGCTTTGCGGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGATTGGCTTCCAGGCGCGGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCg > 2:771333/1‑150 (MQ=255) cACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCa > 1:5075876/1‑112 (MQ=255) cACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCg > 2:1533448/1‑150 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGCGTGCTCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGt > 1:1908183/1‑150 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCCGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCGTGCGCAGGGCgg > 1:655595/1‑149 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGt > 1:3922160/1‑150 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGt > 1:719038/1‑150 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGt > 2:363071/1‑150 (MQ=255) ccGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCAGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATATTCGCGCCGCGTGCGCAGGGCggc > 1:2014150/1‑148 (MQ=255) cGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCg > 2:3191426/1‑150 (MQ=255) cGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCg > 2:2068762/1‑150 (MQ=255) cGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCg > 2:2068773/1‑150 (MQ=255) gttGCCGGTGTTCGCGGGCGTGCCCGCTACCACAAGGGGCGCGGGGCCTGCGCTAGCCACCCACCAGCACGCGAATGGCTTACAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGGCGAttt > 1:2375651/2‑150 (MQ=255) ttGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTc < 1:4957274/150‑1 (MQ=255) ttGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTc < 1:4757914/150‑1 (MQ=255) ttGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTc < 1:3851724/150‑1 (MQ=255) | GTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTC > NC_002947/1316565‑1316863 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |