| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,316,715 | T→A | 6.3% | intergenic (‑228/+50) | PP_1144 ← / ← rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,316,715 | 0 | T | A | 6.3% | 492.4 / 16.0 | 152 | intergenic (‑228/+50) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Reads supporting (aligned to +/- strand): ref base T (78/63); new base A (5/5); total (83/69) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
Only 100 of 159 total aligned reads displayed.
ACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTC > NC_002947/1316567‑1316863 | aCTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTg < 2:893624/150‑1 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGAAGCAACCACAGCGGTGG‑AT‑GCCACCGGCGTTGcc > 2:5383880/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGTACCAACCACAGCGGGGG‑CT‑GCCACCCGCGTTGcc > 2:4224524/1‑150 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCg < 2:3798968/150‑1 (MQ=255) aaGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGAAGCATCCACTGCGGTGG‑GTGGCCACCGGGtttccgg > 1:3792053/1‑146 (MQ=255) aGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGgt < 2:5057825/150‑1 (MQ=255) gCCTTCCTGACTAATGGCACAATGTTTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCAAAGCCGgtg < 1:5109401/150‑1 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCAAAGCCGgtg < 1:1729206/150‑1 (MQ=255) ccTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCAACCAACCACACCCGTGG‑GT‑GCCACCCGCATTGcccgggt > 2:3455701/1‑145 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATCCACAGCGGGGG‑AT‑GCCACCGGCGTTGCCGGTGtta > 2:5250419/1‑149 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCAAAGCCGgtggca < 2:4246354/150‑4 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCAAAGCCGgtggca < 1:1346680/150‑4 (MQ=255) ccTGACTAATGGAACAATGATTTATACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTcgc < 2:4789027/150‑1 (MQ=255) cTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCAAGCATCCACGGCGGTGG‑AT‑GCCACCCGCGTTGCCGGTGTTcgcg > 2:1787302/1‑150 (MQ=255) tGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCgg < 2:5014706/150‑1 (MQ=255) aCTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGc < 2:1168224/150‑1 (MQ=255) tAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCAAGCAAACACAGCGGTGG‑TT‑GGCACCCGCGTTTCCGGGGGTggcgggcgg > 1:1841483/1‑149 (MQ=255) tAATGGCAAAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGt < 2:2083839/150‑1 (MQ=255) tGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGcc < 2:5521740/150‑1 (MQ=255) caATGATTTCTACGATTTGGTTATACCTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTc < 1:1265710/150‑1 (MQ=255) caATGATTTCTACGATTTGGTTATACCTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTc < 1:1457159/150‑1 (MQ=255) aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGACGCAACCAAAGCGGTGG‑AA‑GCCACCGGCGTTTCCGGTGTTGCCGGGCGTGCCCCCTcc > 2:5224100/1‑150 (MQ=255) aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTcc < 2:4041474/150‑1 (MQ=255) aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTcc < 2:5139132/150‑1 (MQ=255) tCTACGATTGGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAgg < 2:294421/150‑1 (MQ=255) aTTTGGTTATAACTCCAATCGCTGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCGGTGGGAGCGGGCGACCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGcgcg < 1:301211/150‑1 (MQ=255) tttGGTTATAACTCCAATCGCAGTGAGGACTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAAAATAAAAAGCGGTGG‑AT‑GCCACCCGCGTTGCCGGTGTTAGCGGGCGTGCCCGCAACCACAAAGGGCGCgg > 2:3856637/1‑150 (MQ=255) ttGGTTATACCACCAATGGCATTGTGTAATAATTTGGGGGCCACACGGCCTGCCTGGGGGCGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTGGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCggg < 1:3372796/150‑1 (MQ=21) tataACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTg < 2:5565646/150‑1 (MQ=255) ataACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCGAGCATCCCCAGCCGTGG‑TT‑GGCCCCCGCATTGCCGGTGGTAGCGGGCGGGCCCCCACCCACAACGGGCGCGGGGCCGgc > 1:5568454/1‑150 (MQ=255) taACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAg < 1:5563089/134‑1 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGTACCATCCACAGCGGTGGTAT‑G‑CACCGGCAGAGCCGGGGTTGGCGGGCGGGCCCGCTCCCACAACGGGCGCGGGGGCGgcgcgtg > 2:5259060/1‑147 (MQ=25) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCCTCCCCTGCGGTGG‑CT‑GCCACCCGCTTTGCCGGTGGTCGCGGGCGTGCCCGCTCCCACCCGGGGCGCGGGGCCTGCGCTag > 2:5470599/1‑150 (MQ=38) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAAACACAGCGGTGG‑AT‑GCCCCCCGCTTTTCCCGTGTTGGCGGGCGGGCCCCCACCCACAAGGGGCGCGGGGCCAgcccaag > 2:2183901/1‑145 (MQ=37) cAATCGCCGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcc < 1:3241660/150‑1 (MQ=255) cAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCgg < 2:4222103/100‑1 (MQ=255) aaccGCTGTGAGCAATAATTTGGGGGCCATACTGCCGGCGTGTGGGAGGGGGCGCGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcca < 1:2840061/147‑1 (MQ=21) aaTCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcca < 1:4597395/150‑1 (MQ=255) aaTCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCAAGCATACACCGCGGTGG‑AT‑TCCACCCGCGTTGCCGGTGGTCGCGGGCGTGCCCCCTCCCACAAGGGGCGCGGGGCCGGCGCGagcca > 2:4347088/1‑150 (MQ=38) tCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAAACAAAAAGGTGG‑AT‑GCCAACCCCGTTTCCCGGGGTCGCGGGCGGGGCCCCGACCACCACGGGCGCGGGGCCGGCGCGagccccc > 1:5014366/1‑147 (MQ=255) cAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGccac < 2:3529300/150‑1 (MQ=255) gTGCGGAATAATTTTGGGGCCCTACGGCCGTCGGGTGGGAGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGccacca < 1:3095388/150‑1 (MQ=25) gAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCAAGCATCCACTGCGGTGG‑AT‑GCCACCCGCTTTTCCGGGGTTAGCGGGCGTGCCCGCACCCACAAGGGGCGCGGGGCCTGCGCAAGCCAGCCACCAGCAcc > 2:5480270/1‑149 (MQ=38) aaTATATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCAcgc < 2:3107699/150‑1 (MQ=255) aaTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCAcgc < 2:3107464/150‑1 (MQ=255) aaTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCAGCATACACAGCCGGGG‑TG‑GCCCCCCCCTTTTCCCGTGGTCGCCGGCGTGCCCCCACCCACCACGGGCCCCCGGCCAGCGCAACCCACcccccacccccc > 2:1160091/1‑144 (MQ=255) aaTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAt < 1:2215492/150‑1 (MQ=255) tttGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATgg < 2:2180029/150‑1 (MQ=255) gCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCa < 2:3802545/150‑1 (MQ=255) ccTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAgg < 1:755598/150‑1 (MQ=255) tAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTTCCGGTGTTAGCGGGCGTGCCCCCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCCCGCGAATGGCTTCCAGgcg > 2:5128566/1‑150 (MQ=255) tGCCTTCCTGTGGGAGCGGGCGAGCCCGCGTAGCATACACTGCGGTGG‑TT‑TCCACCCGCGTTGCCGGGGTTGGCGGGCGTGCCCGCACCCCCCAGGGGCGCGGGGCCGGCGCTATCCCGCCCCCACCCCGCGAATGGGGTCCCGgcgccc > 2:5392493/1‑148 (MQ=255) ttCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcg < 1:2176894/150‑1 (MQ=255) ccTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcggc < 1:1787302/150‑1 (MQ=255) cTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCAACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGcc < 2:1625829/150‑1 (MQ=255) gAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTcc < 2:3681074/150‑1 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTCGCCAGCCACCAGCACGCCAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGcctg > 2:3307898/1‑147 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAtt < 2:3656344/150‑1 (MQ=255) gAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGGGCGCGGGCGTGCCCGCTCCCACCCGGGGCGCGGGGCCTGCGCGAGCCAGCCACCAGCCCGCGCAGGGCTGCCAGGCGCCGGGCGGCCGGCTCCCGcctggc > 2:1406576/1‑145 (MQ=25) cccGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg < 1:4396171/150‑1 (MQ=255) cccGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg > 2:4849587/1‑150 (MQ=255) ccGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg > 1:135640/1‑150 (MQ=255) ccGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg > 1:1213886/1‑150 (MQ=255) ccGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg > 1:3324223/1‑150 (MQ=255) ccGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg > 2:1738272/1‑150 (MQ=255) ccGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg < 2:1927440/150‑1 (MQ=255) gcgAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 1:3905612/1‑150 (MQ=255) gAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCAt > 1:5066769/1‑150 (MQ=255) tggCATCCACCGCAGTGG‑AT‑GCTACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATc > 1:4949697/3‑150 (MQ=255) gCATCCACCGCAGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCtt > 2:2128647/1‑150 (MQ=255) aTCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 2:4510665/1‑150 (MQ=255) aTCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 2:2571489/1‑150 (MQ=255) tCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc < 2:2820177/150‑1 (MQ=255) tCCACCGCAGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 2:811733/1‑150 (MQ=255) ccACTGCGGTGG‑AT‑CCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCAGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgcg < 2:1867450/150‑1 (MQ=255) ccACCGCAGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgcg > 2:5092043/1‑150 (MQ=255) cACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc < 1:2104924/150‑1 (MQ=255) aCTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgcc > 2:386747/1‑150 (MQ=255) aCTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgcc > 1:4904288/1‑150 (MQ=255) ccgcgaacACCGGCAAAGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTgcg > 2:4786706/8‑150 (MQ=255) aT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCGAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAGTGCCAGGCCATCTTCGCGCCGCTTGCGCAg < 2:5623588/150‑1 (MQ=255) t‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAgg < 2:4761620/150‑1 (MQ=255) acACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGc > 1:321205/2‑150 (MQ=255) cACCGGCTTTGCGGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGATTGGCTTCCAGGCGCGGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCg > 2:771333/1‑150 (MQ=255) cACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAgggtg > 2:2644392/1‑148 (MQ=255) cACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCg > 2:1533448/1‑150 (MQ=255) cACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCg > 2:1533286/1‑150 (MQ=255) cACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCg > 1:2061517/1‑150 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGCGTGCTCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGt > 1:1908183/1‑150 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCCGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCGTGCGCAGGGCgg > 1:655595/1‑149 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGt > 1:3922160/1‑150 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGt > 2:363071/1‑150 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTACCACAAGGGGCGCGGGGCCTGGGCTAGCCAGCCACCAGCACGCGAATTGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTTCCAGGGCATCTTCTCGCCGCTTGAGCATGGCGt > 1:4296340/1‑150 (MQ=255) ccGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCAGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATATTCGCGCCGCGTGCGCAGGGCggc > 1:2014150/1‑148 (MQ=255) cGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCg > 2:2068762/1‑150 (MQ=255) cGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCg > 2:3191426/1‑150 (MQ=255) gCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGAt < 2:1294798/150‑1 (MQ=255) tttGCCGGTGTTCGCGGGCGTGCCCCCTACCACAAGGGGCGCGGGGCCAGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGAttt > 1:2407726/1‑150 (MQ=255) gttGCCGGTGTTCGCGGGCGTGCCCGCTACCACAAGGGGCGCGGGGCCTGCGCTAGCCACCCACCAGCACGCGAATGGCTTACAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGGCGAttt > 1:2375651/2‑150 (MQ=255) ttGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTc < 1:5413945/150‑1 (MQ=255) | ACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑AT‑GCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTC > NC_002947/1316567‑1316863 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |