BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	1,385,677	G→T	6.1%	intergenic (‑110/+25)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,385,677	0	G	T	6.1%	626.9 / 21.8	199	intergenic (‑110/+25)	PP_t67/PP_t66	tRNA‑Met/tRNA‑Met
Reads supporting (aligned to +/- strand): ref base G (108/78); new base T (5/8); total (113/86)
Fisher's exact test for biased strand distribution p-value = 2.46e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 206 total aligned reads displayed.

GTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTC  >  NC_002947/1385528‑1385816

gTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACtgtg                                                                                                                                              >  1:3689006/1‑150 (MQ=255)

 ttATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTgtgt                                                                                                                                             >  2:2090860/1‑150 (MQ=255)

  tATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGtt                                                                                                                                            <  1:74762/150‑1 (MQ=255)

       gCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAg                                                                                                                                       >  1:2650893/1‑150 (MQ=255)

       gCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTGTGTATGTCAAGCGCTAGGCTTTGAGTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAg                                                                                                                                       >  1:5472930/1‑150 (MQ=255)

         ccGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTg                                                                                                                                     <  1:5379785/150‑1 (MQ=255)

         ccGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTg                                                                                                                                     <  2:4593206/150‑1 (MQ=255)

             cgaGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑t                                                                                                                                <  2:2484268/150‑1 (MQ=255)

             cgaGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑t                                                                                                                                <  1:4332838/150‑1 (MQ=255)

                 cTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTc                                                                                                                            >  1:4213277/1‑150 (MQ=255)

                 cTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTc                                                                                                                            <  1:1524420/150‑1 (MQ=255)

                 cTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTc                                                                                                                            >  1:3421858/1‑150 (MQ=255)

                   aCCAGGCTGCTCCAGCCCGCGACAGTGGGGCGGATTCTACAGGGTGTGGTTTGTATGTCAAGCGCTAGGCGTTGCTCTTTCGACGTTTGTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACGGTGTTAACAGTGGCC‑TTTTCtt                                                                                                                          <  2:3133336/150‑1 (MQ=18)

                    ccAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGACACTGTGTTAACAGTGGCC‑TTTTCTTg                                                                                                                         >  2:1361617/1‑150 (MQ=255)

                     cAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGa                                                                                                                        <  2:4868773/150‑1 (MQ=255)

                           gctCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTCGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTgg                                                                                                                  <  1:5277937/150‑1 (MQ=255)

                             tCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACCGTGGCC‑TTTTCTTGAATCTGGtt                                                                                                                >  2:214181/1‑150 (MQ=255)

                             tCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGtt                                                                                                                >  1:1478388/1‑150 (MQ=255)

                               cATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAATGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGc                                                                                                              >  1:3084267/1‑150 (MQ=255)

                               cATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGc                                                                                                              >  1:1353345/1‑150 (MQ=255)

                               cATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTGTCGACGTTTAATCTCGAATGCATATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGTCC‑TTTTCTTGATTCTGGTTGc                                                                                                              >  1:913943/1‑150 (MQ=18)

                                aTCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAATGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCg                                                                                                             >  2:1207077/1‑150 (MQ=255)

                                aTCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCg                                                                                                             >  2:5438709/1‑150 (MQ=255)

                                 tCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCgg                                                                                                            <  1:3243255/150‑1 (MQ=255)

                                 tCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGATAATGCTTATCAGAATGCAAAGAAAAAGGCAACTGTGTTAACATTTGAC‑TTTTCTTGAATCTGGTTGctg                                                                                                            >  1:628147/1‑148 (MQ=17)

                                   ccGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAAAGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTGTCTTGAATCTGGTTGCGGGa                                                                                                          >  1:1877818/1‑150 (MQ=255)

                                    cgcgTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGAGGTTTTTTCGATAATGCTTATCAACAGGCAAAGAAAAAGGACACAGTGATAACAGAGTCA‑ATTTCTAGAATCTCGTTGCGGGAg                                                                                                         >  2:5292959/1‑150 (MQ=14)

                                      cgTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGcc                                                                                                       <  2:3087592/150‑1 (MQ=255)

                                           gTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGGTGCGGGAGCCGGAtt                                                                                                  <  2:1229737/150‑1 (MQ=255)

                                            tGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGAttt                                                                                                 <  1:3884767/150‑1 (MQ=255)

                                            tGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGAtt                                                                                                  >  1:2596222/1‑149 (MQ=255)

                                              gggCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGa                                                                                               >  2:1022844/1‑150 (MQ=255)

                                              gggCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGa                                                                                               >  2:5185832/1‑150 (MQ=255)

                                                gCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTg                                                                                                                   >  1:1908357/1‑128 (MQ=255)

                                                gCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAAc                                                                                             <  1:5447024/150‑1 (MQ=255)

                                                  ggATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACcg                                                                                           >  1:992176/1‑150 (MQ=255)

                                                    cttCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGTTTTTTCGACGTTTTTTCGCGAATGCTTATCAGCATGCAAAGTAAAAGGCCACTGTGTTTACTGTGTCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACcgac                                                                                         <  2:2293505/149‑1 (MQ=18)

                                                     ttCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACcgacg                                                                                        >  1:837993/1‑150 (MQ=255)

                                                       cTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCgacgac                                                                                      <  2:565811/150‑1 (MQ=255)

                                                        tACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTTAACACAGTGGCC‑tttttcttt                                                                                                                        >  1:4117082/1‑110 (MQ=21)

                                                        tACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGAcc                                                                                     >  2:2757932/1‑150 (MQ=255)

                                                        tACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGAcc                                                                                     >  1:655718/1‑150 (MQ=255)

                                                        tACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATAAGCAGGCAAAGAAAAAGGCAACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCAGGATTTGAACCGACGAcc                                                                                     >  2:2591770/1‑150 (MQ=255)

                                                         aCAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCt                                                                                    >  2:2043565/1‑150 (MQ=255)

                                                         aCAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCt                                                                                    >  2:2883454/1‑150 (MQ=255)

                                                           aGTGTGAGGTATGTATGTCAAGCGCTAGGCTTTGAGTTTTCGACGATTTGACGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCATGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTc                                                                                  <  2:5456423/150‑1 (MQ=18)

                                                            gggtgtgGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCg                                                                                 <  2:2284644/148‑1 (MQ=255)

                                                             tgtgtgGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCgg                                                                                >  2:858290/1‑150 (MQ=255)

                                                              gtttgGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACTTTTTTTCTCGAATTCTTATCAGCATGAAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCggg                                                                               <  2:1952054/147‑1 (MQ=18)

                                                               tgtgGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGt                                                                              >  2:3605856/1‑150 (MQ=255)

                                                                 tgGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGCCGTTTTTTCGCGTTTGCTTATCAGCAGGCATTGTTAAAGGCGACTGTGTTCAGTGTGGCG‑TTTTGTTGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTa                                                                            <  2:4052102/150‑1 (MQ=18)

                                                                   gTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATg                                                                          <  2:4856829/150‑1 (MQ=255)

                                                                   gTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATg                                                                          >  1:975639/1‑150 (MQ=255)

                                                                        tATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGccc                                                                     >  2:944384/1‑150 (MQ=255)

                                                                        tATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTAAGAGccc                                                                     >  1:3619721/1‑150 (MQ=255)

                                                                         aTGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCcg                                                                    >  2:4932717/1‑150 (MQ=255)

                                                                            tCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCcgacg                                                                 >  2:29868/1‑150 (MQ=255)

                                                                             cAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCcgacga                                                                >  2:611162/1‑150 (MQ=255)

                                                                             cAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTGATGAGCCcgacga                                                                >  2:4118623/1‑150 (MQ=255)

                                                                              aaGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAg                                                               >  2:3405381/1‑150 (MQ=255)

                                                                              aaGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAg                                                               >  1:3547415/1‑150 (MQ=255)

                                                                               atcgcTAGGCTTTGATTTTTCGCCGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTTACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGc                                                              <  2:757766/148‑1 (MQ=255)

                                                                                    tAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCa                                                         >  1:2823676/1‑150 (MQ=255)

                                                                                         tttGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgctg                                                    >  1:645590/1‑150 (MQ=255)

                                                                                         tttGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgctg                                                    >  2:2216432/1‑150 (MQ=255)

                                                                                         tttGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgctg                                                    >  2:1539237/1‑150 (MQ=255)

                                                                                          ttGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgctgc                                                   >  1:3491935/1‑150 (MQ=255)

                                                                                            gATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTACGGGTTATGAGCCCGACGAGCTACCAGGCTGCTc                                                 >  2:2689171/1‑150 (MQ=255)

                                                                                              tttttCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCa                                               >  1:837145/1‑150 (MQ=255)

                                                                                              tttttCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCa                                               >  1:2129053/1‑150 (MQ=255)

                                                                                                     aCGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCcgcg                                        >  1:4118931/1‑150 (MQ=255)

                                                                                                            ttCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTgg                                 >  1:3354740/1‑150 (MQ=255)

                                                                                                             tCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGaa                                                                                              >  2:3761007/1‑88 (MQ=255)

                                                                                                             tCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGaa                                                                                              <  1:3761007/88‑1 (MQ=255)

                                                                                                              tttgcctGCTGATAAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTgggg                               >  2:660935/7‑150 (MQ=255)

                                                                                                              tttgcctGCTGATAAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTgggg                               >  2:1291740/7‑150 (MQ=255)

                                                                                                              cgcgAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACTGTGGCC‑TTTTCTTGAATCTGGTTTCTGGAGCCGGATTTGATCCGACGAGCTTCTGGTTTTGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTgggg                               <  2:5472930/150‑1 (MQ=17)

                                                                                                              cgcgAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCTGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTgggg                               <  2:2650893/150‑1 (MQ=255)

                                                                                                               gcgAATGCTTATCAGCAGGCAAAGAAAATGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGc                              >  1:1665623/1‑150 (MQ=255)

                                                                                                               gcgAATGCTTAGCAGCAGGCAACGAATATGGCCACTGTGTTAACAGTTGAC‑TTCTCTAGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGc                              <  2:1617302/150‑1 (MQ=17)

                                                                                                                 gAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGCGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCgg                            >  1:3050737/1‑150 (MQ=255)

                                                                                                                       ttATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTa                      >  1:208749/1‑150 (MQ=255)

                                                                                                                       ttATCAGCAGGCAAAGAAAAAGGCCACTGTGGTAACAGTGGCC‑TTTTCTTGAATCGGGTTGCGGGAGCCGGTTTTGAACCGACGACCTTCGGGTTAGGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCTGTGGGGCGGATTCTa                      >  2:1836341/1‑150 (MQ=17)

                                                                                                                               agGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCtt                                                                                   >  2:5027702/1‑81 (MQ=39)

                                                                                                                               agGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCgtgt              >  1:107214/1‑150 (MQ=255)

                                                                                                                                   aaaGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgctgc                                                   >  1:1049273/1‑109 (MQ=35)

                                                                                                                                    aaGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGtt                                                                             >  2:4562789/1‑82 (MQ=38)

                                                                                                                                      gAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCgg                                                                                >  1:4323977/1‑77 (MQ=39)

                                                                                                                                      gAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCcgacga                                                                >  2:555924/1‑93 (MQ=37)

                                                                                                                                      gAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTtat       <  1:5516212/150‑1 (MQ=255)

                                                                                                                                       gaaaaGGCCACTGTTAACACAGTGGCC‑TTTTTTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCATCGGGTTATGACCCCGAACAGCAACCAGCCTGCTCCATACACCGTAGGGGGGGCGGAATCTACAGCGTGGAGGTtatt      >  1:4072016/2‑149 (MQ=9)

                                                                                                                                       gaaaaGGCCACTGTTAACACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTtata      >  2:1491439/2‑150 (MQ=255)

                                                                                                                                          aaGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgc                                                      >  2:1247854/1‑99 (MQ=37)

                                                                                                                                           aGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAAc                                                                                             >  2:355395/1‑59 (MQ=255)

                                                                                                                                           aGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTc  <  1:2883454/150‑1 (MQ=255)

                                                                                                                                            ggCCACTGTTAACACAGTGGCCTTTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCAACCCGCGACAGTGGGGCGGAGTCTACAGCGTGTAGTTAATATGTc  >  1:5540247/1‑150 (MQ=17)

                                                                                                                                               cACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCt                                                             >  1:1418025/1‑87 (MQ=38)

                                                                                                                                                  tgtgTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTAt                                                                           >  1:1190509/1‑70 (MQ=40)

                                                                                                                                                  tgtgTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGt   >  1:1003894/1‑142 (MQ=255)

                                                                                                                                                     gtTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCggg                                                                               >  2:4323194/1‑63 (MQ=35)

GTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTCGACGTTTTTTCGCGAATGCTTATCAGCAGGCAAAGAAAAAGGCCACTGTGTTAACAGTGGCC‑TTTTCTTGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGCGTGTAGTTTATATGTC  >  NC_002947/1385528‑1385816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`