| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,397,891 | T→C | 11.3% | intergenic (+106/‑80) | PP_1214 → / → ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,397,891 | 0 | T | C | 11.3% | 367.6 / 29.4 | 136 | intergenic (+106/‑80) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| Reads supporting (aligned to +/- strand): ref base T (80/36); new base C (10/5); total (94/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.63e-01 | |||||||||||
Only 100 of 142 total aligned reads displayed.
CAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCC > NC_002947/1397743‑1398040 | cAATGCCCAGATTTCCGACGAGATCATGGAATACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATgtggt‑g < 2:2927634/150‑1 (MQ=255)cAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATgtggt‑g < 2:4594265/150‑1 (MQ=255)cAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGGGAACCCGCGCCGACAGGGGTTACGCC‑CCATTAAA‑ATgtggt‑g > 2:4713267/1‑150 (MQ=255) aTGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCa < 2:3673342/150‑1 (MQ=255) aTGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCa < 2:3673309/150‑1 (MQ=255) tGCCCATATTTCCGACGAGATCATGGAAAACCTCGGCTTAGGTGATTTGGCATTTTGTGCCAACTCTGAGAGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGTTTAAACCCGCTACTACAGGTATTTCGCC‑CATTTCAA‑ATGTGGT‑GCAg < 1:765026/150‑1 (MQ=255) cccAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTa < 1:3673228/150‑1 (MQ=255) cccAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGGAAACCCGCGCCGACAGGGATGACCCC‑CCATTCAA‑AGGTGGT‑Gccgga > 2:2502923/1‑146 (MQ=255) ccAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTTAACCCGCTCCAACAGGTATTACGCC‑CCATTCAA‑ATGTGGT‑GCCGTAc > 2:3463578/1‑150 (MQ=255) cAGATATCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAATACCGCTCCGAACGGTAATTAGCC‑CCATTCAA‑ATGGGGT‑GCAGTAcc > 2:4303954/1‑150 (MQ=255) aGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCt < 2:5612935/150‑1 (MQ=255) tttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAA‑ATG‑GGC‑GTAATACCTGTa < 2:3255665/150‑1 (MQ=21) tttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAA‑ATG‑GGC‑GTAATACCTGTa < 2:1897019/150‑1 (MQ=21) ttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAg < 1:345264/150‑1 (MQ=255) ttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAg < 1:4592392/150‑1 (MQ=255) gacgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGc < 1:5462700/150‑1 (MQ=255) gacgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTTGAA‑ATG‑GGC‑GTAATACCTGTAGGAGc < 2:4138137/150‑1 (MQ=18) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCgg < 2:3394817/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCgg < 2:2782954/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCgg < 1:743076/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCgg < 2:5089330/150‑1 (MQ=255) cATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTAc < 2:1742333/150‑1 (MQ=255) cATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTAc < 2:880129/150‑1 (MQ=255) aTGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTAcc < 1:4719153/150‑1 (MQ=255) aTGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTAcc < 1:4719280/150‑1 (MQ=255) ggAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACGTATTAAGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGAGGGTTTACCcg > 2:4215675/1‑150 (MQ=255) ggAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACAGGGATTACGCC‑CAGTTAAA‑ATGTGGT‑GCAGTACCGGGAGGAGCGGGTTTAACcg > 2:4215517/1‑150 (MQ=38) gAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACAGGTATTACGCC‑CAGTTAAA‑AAGTGGT‑GCAGTACCAGTAGGAGCGGGGTTAACcgc > 2:1273044/1‑150 (MQ=38) gAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCGTTCGCGGGTGATGCCGCGCCAACCGGTATTAGGGC‑CCGTGGAA‑AGGTGGT‑GGGGGAGCGGTTGGAGGGGGGTTAGCcgc > 1:3216237/1‑150 (MQ=255) ccTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTAACTGTAGGAGCGGGTTTACCCGCGAAAg > 2:4210017/1‑150 (MQ=255) cAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTTAACCCGCGCCAACACGGATTACCCC‑CAATTACA‑AAGTGGG‑GCAGTAACCGTAGGTGCCGGGTTAACCGCCCAAGGGCCCGCGCGGTTTTTAGGGATGcgaaaat > 2:287406/1‑144 (MQ=255) cAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCAACACGTAATACCCC‑CATTTCAA‑ATGTGGT‑GCAGTACCGGTAGGAGCGGGGTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGAAGCATCAtt > 2:1264932/1‑150 (MQ=37) gAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CGTTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGGATCATTTTTTCGa > 2:2242375/1‑150 (MQ=255) aGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCCCACCACAAGGTATTACGCC‑CCTTTCAA‑ATGTGGG‑GCAGTAACGGGAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCCGTTTGTAGAGATGCCTAATTTTTTCGAc > 2:2948915/1‑150 (MQ=37) cGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCCCTCCTACAGGTATTACGCC‑CCAGTCAA‑ATGTGGT‑GCACTAACGGTAGGAGCCGGGTTAACCGCGAAAGGGCCCGCGCACGTTGTAGAGATGCAACAAGTTTTCGACgg > 2:3730950/1‑150 (MQ=25) ttttATCGCGCGTGTGCCGGCCCTTGCGGGTTTAACCCGGCCCCCACCGGTATACCGCC‑CTTTCCAA‑TTGTGGT‑GCTTTACCTTTAGGCGGGGTTTAACCCGCGAATGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGc < 2:4354331/150‑1 (MQ=255) gATCGCGCCTGTGCCGGCCCTTTCGCGGTTAAACCCGCCCCTACTGTTATTACGCC‑CTTTTCAA‑ATGTGGT‑GCTGTACCTGTTGGAGGGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCttt < 2:1846021/150‑1 (MQ=37) tcgcgcGTGGGCCGGCCCTTGGGCGGGTACCCCGGCTCCTCCTGTTTTCCCGCC‑AATTGCAA‑TGGTGGT‑GCCGTCCGTGTTGGGGGGGTTTTACCCGGTAACGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTAt < 2:2567521/148‑1 (MQ=255) tcgcgcCGGGGCCGGCCGTTGCGGGGGTAACCCGGCGCGTCCCGGTATTCCGCC‑CTTTTCAA‑TGGTGGT‑GCTGTCCGGGTCGGGGGGGTTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTAt < 2:5615009/148‑1 (MQ=255) gcgtgggccgccCCTGTCGGGTCTAACCCGGCTCCACCCGGTATACCCCC‑CATTTC‑A‑ATGGGGTGGCCTCACCTTTAGGGGGGGTTTCACCCGCGAATGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGAct < 2:1606156/144‑1 (MQ=255) cTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTAAAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCCGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGActct > 2:5545014/1‑150 (MQ=255) gccccTTGCGCGGTTAACCCCGCGCCTACCGTTATACCCCA‑CATTTCAA‑TGGTGGT‑GCCGACCCGGTTGGAGCGGTTTACCCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa < 2:5281642/148‑1 (MQ=255) gCCCTTGCGGGGGTAAACCCGGCTCTAACGGTTTTACCCC‑CATTTAAATTTGGGGG‑GCCGGCCGTGTGGGAGGGTTTTCACCCGCGAACGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa < 2:1860829/150‑1 (MQ=255) ccTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CCTTTCAA‑ATGTGGT‑GCAGTACCTGTGGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCCGTTTTTAGATATGCCTCATTTTTTCGACGGGGTTTATGACTCGGATTATAGGt > 2:756205/1‑150 (MQ=25) ggTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTGGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGCTTCTAGGTATCGAcccc > 2:4773723/1‑150 (MQ=255) gTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCg > 1:1693442/1‑150 (MQ=255) tAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCg > 1:2507321/1‑112 (MQ=255) tAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCg < 2:2507321/112‑1 (MQ=255) tAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCgg > 2:175295/1‑150 (MQ=255) aCCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTc > 2:4487617/1‑150 (MQ=255) aCCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTc > 1:3183683/1‑150 (MQ=255) tcGCTCCTACAGGTACTGCACCACATTTGAA‑ATG‑GGC‑GTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc < 1:4154527/149‑1 (MQ=18) ccGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 1:3409097/1‑150 (MQ=255) ccGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 1:3549983/1‑150 (MQ=255) ccGCTCCTACAGGTACTGCACCACATTTGAA‑ATG‑GGC‑GTAATACCTGTAGGAGCGGGTTTACCCGCGAACGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 1:1882002/1‑150 (MQ=18) cGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgcg > 1:2636855/1‑150 (MQ=255) gCTCCTACAGGTACTGCACCACATTTGAA‑ATG‑GGC‑GTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCGAGGTATCGACCCCGGCTCgcgc > 2:2909495/1‑150 (MQ=18) tCCTACAGGTACTGCACCACATTTGAA‑ATG‑GGC‑GTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGAAGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAt > 2:2563398/1‑150 (MQ=18) ccTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATc > 1:258441/1‑150 (MQ=255) cTACAGTTATTCCGCC‑AATTTAAA‑TTGTGGT‑GCAGCCCCTTTTGGAGGGGTTTAACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa < 2:2165777/150‑1 (MQ=255) cTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 1:2964950/1‑150 (MQ=255) cTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:879690/1‑150 (MQ=255) cTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:4147370/1‑150 (MQ=255) tACAGGTACTGCACCACATTTGAA‑ATG‑GGC‑GTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:5450429/1‑150 (MQ=21) tACAGGTACTGCACCACATTTGAA‑ATG‑GGC‑GTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 2:2658925/1‑150 (MQ=21) tACAGGTACTGCACCACATTTGAA‑ATG‑GGC‑GTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:3965967/1‑150 (MQ=21) tACAGGTACTGCACCACATTTGAA‑ATG‑GGC‑GTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:2292607/1‑150 (MQ=21) tACAGGTACTGCACCACATTTGAA‑ATG‑GGA‑GTAATACCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:3452668/1‑150 (MQ=21) aCAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAcc > 2:2199441/1‑150 (MQ=255) aCAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAcc > 1:1049564/1‑150 (MQ=255) cAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATAACCg > 1:4950502/1‑150 (MQ=255) aGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 1:2450205/1‑150 (MQ=255) aGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 1:4515405/1‑150 (MQ=255) aGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 2:613422/1‑150 (MQ=255) aGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 1:4515657/1‑150 (MQ=255) ggTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGc > 1:280952/1‑150 (MQ=255) gTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCt > 1:4950151/1‑150 (MQ=255) gTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCt > 2:2399730/1‑150 (MQ=255) ttACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACGGGCTATg > 1:46050/1‑150 (MQ=255) cGCC‑CATTTCAA‑TTGTGGT‑GCAGTCCCTGTCGGTGCGGGTTCACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCg < 2:4497820/150‑1 (MQ=255) gCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTCGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 1:4073859/1‑150 (MQ=255) gCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 2:4950455/1‑150 (MQ=255) gCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 1:1434410/1‑150 (MQ=255) gCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 1:215867/1‑150 (MQ=255) gCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 2:2578665/1‑150 (MQ=255) gCC‑CATTTCAA‑ATGTGGT‑GCAGTACCGGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 2:2578688/1‑150 (MQ=255) accacATTTGAA‑ATG‑GGC‑GTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 1:576119/5‑150 (MQ=37) cc‑cATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTg < 1:2025211/150‑1 (MQ=255) cc‑cATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTg > 1:4702389/1‑150 (MQ=255) cc‑cATATCAA‑AAGGCGA‑GCAGTACCTGGAGGAGCCGGTTTACCCGCGAAAGGGCCGGCGCAGAGTGTAGAGATGCATAATATTTTAGACGCGCATTCTGACTCAGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTg > 2:2561693/1‑150 (MQ=255) c‑cATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTgg > 1:2024596/1‑150 (MQ=255) c‑cATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTgg > 2:4613762/1‑150 (MQ=255) c‑cATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTgg > 1:663356/1‑150 (MQ=255) tttCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTAc > 1:1935811/1‑150 (MQ=255) ttCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACg > 2:1839605/1‑150 (MQ=255) ttCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACg > 2:1027137/1‑150 (MQ=255) aa‑aTGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCa > 1:5344716/1‑150 (MQ=255) aa‑aTGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCa > 1:2886836/1‑150 (MQ=255) gt‑gCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGcc > 2:2059345/1‑150 (MQ=255) t‑gCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGccc > 1:2031124/1‑150 (MQ=255) | CAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTTCAA‑ATGTGGT‑GCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCC > NC_002947/1397743‑1398040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |