| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,479,952 | C→A | 12.6% | intergenic (‑776/+25) | algD ← / ← PP_1289 | GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,479,952 | 0 | C | A | 12.6% | 637.6 / 67.9 | 220 | intergenic (‑776/+25) | algD/PP_1289 | GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base C (91/100); new base A (7/21); total (98/122) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.62e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 222 total aligned reads displayed.
CAAAAAAGGTATGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATGCGCTGCTGGATGA > NC_002947/1479804‑1480101 | cAAAAAAGGTATGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCa < 2:4575365/150‑1 (MQ=255) aaaaaGGTATGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGc > 2:1157094/1‑150 (MQ=255) aaaaaGGTATGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGc > 1:2854445/1‑150 (MQ=255) aaaGGTATGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTGAAGCcg > 2:2903751/1‑150 (MQ=255) aaGGTATGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTGAAGCcgc < 2:5318906/150‑1 (MQ=255) gTATGCACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTGAAGCCGCGaa < 1:4296815/150‑1 (MQ=255) gTATGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTGAAGCCGCGaa < 1:1203578/150‑1 (MQ=255) gTATGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTGAAGCCGCGaa < 2:4882734/150‑1 (MQ=255) gTATGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTGAAGCCGCGaa < 2:2017272/150‑1 (MQ=255) gTATGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTGAAGCCGCGaa < 1:4195420/150‑1 (MQ=255) aTGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑C‑‑‑CCTCTTCGCGGCTGAAGCCGCGAaga < 2:729177/150‑1 (MQ=255) aTGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAaga < 2:85786/150‑1 (MQ=255) aTGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAaga < 2:63736/150‑1 (MQ=255) aTGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAaga < 1:1462541/150‑1 (MQ=255) aTGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTGAAGCCGCGAaga < 2:1421823/150‑1 (MQ=255) tGAACGGTCTTATGGCGTTTGGCGCTACAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAagag < 1:3628019/150‑1 (MQ=255) tGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAagag < 1:424667/150‑1 (MQ=255) tGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTGAAGCCGCGAagag < 1:4158605/150‑1 (MQ=255) gAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGaa < 1:1128847/146‑1 (MQ=255) ggTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGt < 1:4039968/150‑1 (MQ=255) tCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGa < 2:1009190/150‑1 (MQ=255) tCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGa < 2:3778150/150‑1 (MQ=255) cTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGAc < 1:413555/150‑1 (MQ=255) cTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGAc < 1:190449/150‑1 (MQ=255) ttATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGTTGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACa > 2:5355863/1‑150 (MQ=255) tGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGc < 1:4550031/150‑1 (MQ=255) ggCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCt > 2:2353568/1‑150 (MQ=255) ggCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCt > 1:4919976/1‑150 (MQ=255) gCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTc > 2:1865370/1‑150 (MQ=255) cGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCa < 2:2276528/150‑1 (MQ=255) gATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCgg < 1:2638899/150‑1 (MQ=255) aTAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCggg < 1:1067197/150‑1 (MQ=255) aTAAAGGGAGGTGCGACGGATTTTGGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGTTCACGGCTGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCggg < 2:85720/150‑1 (MQ=255) acaGGGAGGTGCGCCGGATCTTGGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGGTGCAGGGCAGCGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGt < 2:3859046/148‑1 (MQ=255) ggcggggcgcCGGATTTTGGGCGTCGGAGTCGTGGCGTGCTGGCGGTTGGCAGCGGGCCCTGTTGCAGGGCAGAGGCGGATCCCGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGCAGCGGGCGTGACAGGCTCACGCCGCGGGGTGATc < 1:884747/144‑1 (MQ=255) aGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATcgc < 1:3916539/150‑1 (MQ=255) ggTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATcgcg < 1:2988846/150‑1 (MQ=255) tGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCa < 2:26576/150‑1 (MQ=255) tGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCa < 2:26491/150‑1 (MQ=255) aCGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGaa < 1:5606695/150‑1 (MQ=255) aCGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGaa < 2:1825760/150‑1 (MQ=255) tCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTg > 2:3523267/1‑150 (MQ=255) tCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTg < 1:2164780/150‑1 (MQ=255) cGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTgg < 2:2703910/150‑1 (MQ=255) gATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCt > 2:137364/1‑150 (MQ=255) ttCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCACAGGAACACCAAATGGTCTGGCTTg < 2:4108437/150‑1 (MQ=255) gTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACCGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCCAATGGTCTGGCGTGGAc > 1:4727685/1‑150 (MQ=255) gTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGAc > 1:1328502/1‑150 (MQ=255) gTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACCCCGCGGAGTGagcct < 1:3394728/121‑5 (MQ=255) gTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACCCCGCGGAGTGagcct > 2:3394728/1‑117 (MQ=255) tGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACt > 1:3714785/1‑150 (MQ=255) tGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGcgcg > 1:5091746/1‑150 (MQ=255) tGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCg > 1:4518131/1‑150 (MQ=255) aTGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGAc > 2:467522/1‑89 (MQ=255) tGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCa > 2:1650408/1‑150 (MQ=255) ggCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCAc < 2:2122151/150‑1 (MQ=255) cGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTGTCACGCCCTCTTCGCGGCTGAAGCCGCGAAGAggtc < 2:1591683/85‑3 (MQ=12) cGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTGTCACGCCCTCTTCGCGGCTGAAGCCGCGAAGAggtc > 1:1591683/1‑83 (MQ=12) cGGTATGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTg > 1:238471/1‑150 (MQ=255) gTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTgta < 1:1262663/150‑1 (MQ=255) ttGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTgtagt < 2:2489309/150‑1 (MQ=255) tGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTgtagta < 2:3024924/150‑1 (MQ=255) tGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTgtagta < 2:3442275/150‑1 (MQ=255) cAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTgtagtagt > 2:4439504/1‑150 (MQ=255) aGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTgtagtagta > 2:660397/1‑150 (MQ=255) gCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTAc < 2:1328502/150‑1 (MQ=255) ctctGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTAc > 1:348228/4‑150 (MQ=255) cGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTAcc > 1:3061020/1‑150 (MQ=255) ccTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGa > 2:4646408/1‑150 (MQ=255) ccTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGa < 1:2505509/150‑1 (MQ=255) ccTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGa > 2:1914587/1‑150 (MQ=255) ccTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGa < 2:3992365/150‑1 (MQ=255) cTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAg < 2:348228/150‑1 (MQ=255) tGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGc < 2:550659/150‑1 (MQ=255) ttGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCTCGGCTTCAGCAGCCAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGAACGCGCACGAACACCAAATGGTCAGGCTTGGAATGCTCGGCAATGTATTAGTACCCCTGAGAAt > 1:954248/1‑150 (MQ=255) cAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGa > 2:3642711/1‑150 (MQ=255) cAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGc > 2:3752578/1‑150 (MQ=255) gagGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCtt < 2:232450/150‑1 (MQ=255) gagGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCtt < 2:5332878/150‑1 (MQ=255) ggCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGa < 2:3454952/150‑1 (MQ=255) aTCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGt < 1:4950185/150‑1 (MQ=255) cACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCGTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTc > 1:754682/1‑150 (MQ=255) ggcggcTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACAGCTCAAGCAGTTcgat < 2:5044549/150‑4 (MQ=255) ggcTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGt < 2:2798191/150‑1 (MQ=255) cTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGc > 2:5174513/1‑150 (MQ=255) tG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCt > 1:94004/1‑150 (MQ=255) tgtccTCTTCGCGTCTTGAGCCGCTAAGAGTGAGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTTTCTTGGACTGCTCTGCACTGTAGTAGTACCCCTGAGCATCGAACTTCTTGAGCTGTTCCGGGGTGCt < 1:5393184/147‑1 (MQ=255) ctctTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATg < 2:1556240/150‑1 (MQ=255) tctTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATgc > 2:5096449/1‑150 (MQ=255) tctTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATgc > 1:5098827/1‑150 (MQ=255) tctTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATgc > 1:5501456/1‑150 (MQ=255) ttCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATgcgc > 1:4732444/1‑150 (MQ=255) ttCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATgcgc > 2:1116944/1‑150 (MQ=255) ttCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATgcgc > 2:1480841/1‑150 (MQ=255) tCGCGGCTGAAGCCGCGAAGAGGTCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATGCgct > 1:3534655/1‑150 (MQ=255) cgcgGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATGCgctg > 1:4669550/1‑150 (MQ=255) gcgGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATGCgctgc < 2:2223802/150‑1 (MQ=255) ggCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATGCGctgctg > 2:446932/1‑150 (MQ=255) cTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATGCGCTGCTGGa < 2:1046129/150‑1 (MQ=255) cAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGATGATGCGCTGCTGGATGa < 1:137364/150‑1 (MQ=255) | CAAAAAAGGTATGAACGGTCTTATGGCGTTTGGCGATAAAGGGAGGTGCGACGGATTTTTGGCGTCGGATTCGTGGCGTGATGGCGGTTTGCAGCGTGCCCTGTTGCAGGGCAGAGGCGGATCACGGCGGCTG‑‑A‑‑‑CCTCTTCGCGGCTTCAGCCGCGAAGAGGGCGTGACAGGCTCACTCCGCGGGGTGATCGCGCAGGAACACCAAATGGTCTGGCTTGGACTGCTCGGCACTGTAGTAGTACCCCTGAGCATCGAACTGCTTGAGCTGTTCCGGGGTGCTGATGCGCTGCTGGATGA > NC_002947/1479804‑1480101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |