| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,644,576 | A→C | 12.3% | intergenic (‑175/‑136) | czcR‑III ← / → PP_1439 | response regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,644,576 | 0 | A | C | 12.3% | 494.3 / 47.4 | 177 | intergenic (‑175/‑136) | czcR‑III/PP_1439 | response regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (75/79); new base C (12/10); total (87/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.54e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 178 total aligned reads displayed.
ACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCA > NC_002947/1644427‑1644724 | gcGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGa > 1:3742022/2‑150 (MQ=255) ttCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACgg < 2:3101067/150‑1 (MQ=255) ttCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACgg < 2:2912349/150‑1 (MQ=255) tCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACggg < 2:4845604/150‑1 (MQ=255) ttGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGtt < 1:1665155/150‑1 (MQ=255) tGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGttt < 2:3749792/150‑1 (MQ=38) aCCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCTGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑Ac > 1:1053285/1‑150 (MQ=255) cccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑Acc < 1:2013344/150‑1 (MQ=255) ccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑Actc < 1:701389/150‑3 (MQ=37) ccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑Actc > 1:489827/1‑148 (MQ=37) ccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑Accc < 2:439924/150‑1 (MQ=255) ccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑Accc < 2:3291696/150‑1 (MQ=255) ccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATGTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGACCGGGTTT‑Accc < 2:4493200/150‑1 (MQ=255) tGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCcgc > 1:820569/1‑150 (MQ=255) aGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGaa < 2:3183308/150‑1 (MQ=37) aGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGaa < 1:1408505/150‑1 (MQ=255) aGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGaa < 2:2270924/150‑1 (MQ=255) tGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAaga < 1:1438960/150‑1 (MQ=37) tGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAaga < 1:2461280/150‑1 (MQ=255) gACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAagag < 1:2778270/150‑1 (MQ=255) gACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAagag < 1:4059147/150‑1 (MQ=255) aTCAGGGTCATGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGTGTAAACCCGTTCCTCCAGGCGCGGGTTT‑ACTCGCGAAGAGGcc < 2:1488033/150‑1 (MQ=25) aTCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAaga < 2:2599713/146‑1 (MQ=25) aTCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGcc < 2:757063/150‑1 (MQ=255) tCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGccc < 1:5124558/150‑1 (MQ=25) tCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑Accc > 1:2096189/1‑138 (MQ=255) gggTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTTTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGaa < 2:4379844/150‑1 (MQ=255) ggTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAAc > 1:810269/1‑150 (MQ=255) gTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACa < 1:4638894/150‑1 (MQ=255) tcgaGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAg > 2:5299459/4‑150 (MQ=255) gcAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTCATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAg < 2:3857019/149‑1 (MQ=255) cccAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCcacaca > 2:2498235/1‑150 (MQ=255) cccAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCcacaca > 2:886118/1‑150 (MQ=255) ccAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑AACCGCGAAGAGGCCCGAACAGTacacacca > 1:3295305/1‑148 (MQ=255) tGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGcc > 2:2712746/1‑150 (MQ=255) gCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACGCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGc > 2:3973210/1‑150 (MQ=255) cagtaaaaaaGGCCGGGGGTGAAGATAACGGATTTGTAATTCTGTTGTTTTGTGGCTGTGTGTTCGGGCCTCTGCGCGAGTAAACCCGCGCCTTTAGGAAGGGGTTT‑ACCCGCGAATTGGCCCGAACAGTCCACACAAGGCCACATTGCa < 1:5049904/146‑1 (MQ=255) cATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCa > 1:2923802/1‑150 (MQ=255) cATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCa > 2:794699/1‑150 (MQ=255) aTGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAATCCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAg > 2:32054/1‑150 (MQ=255) aTGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCCCATTGCAg > 1:5342595/1‑150 (MQ=255) tGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAgg > 2:4993364/1‑150 (MQ=255) gAAAAATGGCCTGGGGTGCATATAACGGATTTGTAATTCTGCTGTCATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCTAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGa < 1:3684168/150‑1 (MQ=255) gAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGa > 2:1599491/1‑150 (MQ=255) aaaaaaGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGAc > 1:1352715/1‑150 (MQ=255) aaaaaaGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGAc > 1:2223722/1‑150 (MQ=255) gCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATc < 2:4958645/150‑1 (MQ=255) gCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATc > 2:40/1‑150 (MQ=255) gCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCGGTAGGAACGGGTTT‑AACCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATc > 2:11/1‑150 (MQ=255) gCCGGCGGTGCAGATAAGGGATTTGTACTTCGGCTGTTATGGGGCTGTCTGTTCGGGCCTCTTCGCGAGTAACCCCGCGCCGGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATc < 2:693799/150‑1 (MQ=38) tGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATcccc > 2:184192/1‑150 (MQ=255) cAGATACGGGTTTTTTATTTCTTGTTTTATCTGGCTGTGTGTTGGGGCATCTTCGCTTTTAAACCCGGGCCTTTTGGACGGGTTTT‑ACCCGCTATGTGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCAc < 1:5405356/150‑1 (MQ=255) gATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACCTTGCAGGACTGTAATCCCCGCCTCACCt > 1:4152570/1‑150 (MQ=255) gATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCt > 2:5479736/1‑150 (MQ=255) ggATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTAGCGAGTAAACCCCCGCCGGTAGGAACCGGTTT‑AACCGCGAAGAGGCCCCAACAGTCCACACAACGCCACAATTCAGGACTGTAATACCCGCCACACCATGCCgg > 1:560595/1‑149 (MQ=255) tgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa < 2:1066540/150‑1 (MQ=255) tgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa < 2:1473089/150‑1 (MQ=255) tgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa > 2:1303011/1‑150 (MQ=255) tagcTGGCTGTCTGTTGGGGCATCTTCGCGATTAAACCCGCGCCTGTAGGAACGGTTTT‑ACCCGCTAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGa < 1:2674467/147‑1 (MQ=255) aTCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGAt < 2:4718478/150‑1 (MQ=255) aTCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGAt > 2:1032183/1‑150 (MQ=255) tCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGGTAGCCCGCCCTCGCTAGGATg > 2:2442169/1‑150 (MQ=255) ctgtctgtTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTCGGACCGGGTTT‑ACCCGCGAAGCGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCgt < 1:427293/150‑1 (MQ=255) tgtTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTg > 2:4583536/1‑150 (MQ=25) tgtTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTg > 2:3469229/1‑150 (MQ=255) gggCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCgg > 2:508209/1‑150 (MQ=255) gCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtt < 2:1368241/150‑1 (MQ=255) ccTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtta > 1:994502/1‑150 (MQ=255) ctTCGCGGGTAAAGCCGTTCCTACTGGCGCGGGTTT‑ACTCGCGAAGTGGCCCGAACAGTCCACACAAGGCCACATTGCTGGACTGTAATCGCCGCGTCTCCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatta > 2:5338466/1‑150 (MQ=255) ttCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTAc > 1:2205988/1‑150 (MQ=37) ttCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTAc > 1:5593097/1‑150 (MQ=37) cgcgAGTAACCCCGCGCCTTTGGGAAGGTTTGA‑ACCCCCCACGAGCCCCGAACTGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa < 1:1402334/150‑1 (MQ=255) cgcgAGTAACCCCGCGCCGGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa < 2:3010290/150‑1 (MQ=255) cgcgAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa < 1:886118/150‑1 (MQ=255) gcgAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg > 1:158890/1‑150 (MQ=255) gggTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 1:3320903/3‑150 (MQ=37) ggTAAACCCGTTCCTACAGGCGCGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCa > 1:1943080/2‑150 (MQ=38) aaaCCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAac > 2:349368/1‑150 (MQ=38) aCCCGCGCCTGTAGGAACGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAacac > 1:4437597/1‑150 (MQ=255) aCCCGCGCCTGTAGGAACGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAacac > 2:3529310/1‑150 (MQ=255) aCCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAacac > 1:3097157/1‑150 (MQ=255) aCCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAacac > 2:152134/1‑150 (MQ=255) ccGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa < 2:716877/150‑1 (MQ=255) ccGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa < 2:1300733/150‑1 (MQ=255) ccGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa > 1:259864/1‑150 (MQ=255) cgcgCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGAt > 1:2742022/1‑150 (MQ=255) cgcCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGa > 2:3869998/1‑150 (MQ=255) gcCTGTCGG‑ACGGGTTTCCCCCGCCAAGCGGCCCTAACAGCCAACACACGGCCACTTTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGaa < 1:1847295/150‑1 (MQ=255) ccTGTCGCAACGGGTTT‑ACCCGCTAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAAc < 1:4325848/150‑1 (MQ=255) ccTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAAc < 2:430218/150‑1 (MQ=255) tttAGTAAGGGTTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCt < 1:1218115/148‑1 (MQ=255) tGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa > 1:4449903/1‑132 (MQ=255) gTAGGAACGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCgtgt < 2:4782608/114‑1 (MQ=255) gTAGGAACGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCgtgt > 1:4782608/1‑114 (MQ=255) gTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTg > 2:2278188/1‑150 (MQ=255) tAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTg > 2:4188340/1‑54 (MQ=255) tAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTg < 1:4188340/54‑1 (MQ=255) tAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGa > 1:1488834/1‑150 (MQ=255) gAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCa > 2:2190446/1‑150 (MQ=255) gAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCAACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTGAGCCAGCCCTCCCTAGGATGGCCGTGTCTGATCGGGTATTACGAGGCAAACACGAAGAACCTGAccc > 2:5076813/1‑149 (MQ=255) | ACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCA > NC_002947/1644427‑1644724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |