| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,911,767 | A→G | 7.9% | intergenic (+116/+12) | nirD → / ← PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,911,767 | 0 | A | G | 7.9% | 578.6 / 26.6 | 193 | intergenic (+116/+12) | nirD/PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| Reads supporting (aligned to +/- strand): ref base A (86/87); new base G (9/6); total (100/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
Only 100 of 196 total aligned reads displayed.
GAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCGA > NC_002947/1911618‑1911915 | gggggCGGGGGTGGAGCGGGGGGGGGCCTGATACCCCTTTGCGGCCTGGGCCGGCCTCTTCGCGGGCACGCCCGCTCCTCCGGAATCTGCACCGCCTTGTAATCCGGCGCCGACCCTGTGGGAGCGGGCTGGCCCGCGAAGAGGCCAGca < 2:1685014/150‑1 (MQ=37) ggAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACaa < 2:3214155/150‑1 (MQ=255) ggCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCGGTGGGAGCGGGCTTGCCCGCGAAGAGGCCCGCACAAGcc > 2:1752958/1‑150 (MQ=255) ccgggcgcacgccgccggggttggttatctagtcggcctgtgccGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGa > 2:303246‑M1/45‑150 (MQ=255) cGGTGGAGCTGGGGGTGGCCTGATACCCCTTGGCTGCCTGGGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATCCGGCGCCGACCCTGGGGGAGCGGGATTGCCCGCGAAGAGGCCAGCACAAGCCGa < 2:4855943/150‑1 (MQ=38) tGGGGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCCCGCCTACGGCATATGCACCGCCGTGTAAAAACGCGCCCACCCCGTGGGAGCGGGCGTGCCCCCGAAGAGGCCCGCACAAGCCCAcaa > 2:5175034/1‑148 (MQ=255) ggcgcacgccgcaggggttggttatctagtcggcctgtgccGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTa > 2:4604013‑M1/42‑150 (MQ=255) tGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATaac < 2:3748358/150‑1 (MQ=255) ccTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCGCCGACGGAATCTGCACCGCCGTGGAATACGGCGCCGACCCAGGGGGAGCGGGCTTGCCCGCGAAGAGGCCCCCACAAGCCGACAAGATAACCAAccccag > 2:3597007/1‑148 (MQ=38) tGATACCCCTTTGCTGCCTGTGCCGGCCTCGTCGCGGGCCATCCCCCTCCTACGGGATCTTCACCGCCGTGTAAAACGGCGCCCGCCCGGTGGGAGCGGGCGTTCCCGCGCAGAGGCCAGCACAAACCGACTAGCTAACCAACCCCAgcg > 2:2932877/1‑150 (MQ=255) cTTTGCTGCCTGTGCCGGCCTCTTAGCGGGCCACCCCCCGCCGACGGGAACTGCACCCCCGGTGAAAACCGCGCCCCCCCCGGGGGGGCGGGCGTGGCCGCCGCGGGGGCCGCCCAAGCCCCCGAGAAAAACAAACCCCCCGGCGTgcgc > 2:1472293/1‑150 (MQ=255) ttggcggcCTGGGCCGGCCTCTCCGCGGGCAAGCCCGCGCCGACGGAATCTGCACCGCCTTGTAATCCGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGcc < 2:1107861/144‑1 (MQ=38) tgctgcCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCg < 2:4403169/150‑1 (MQ=255) tgctgcCTGGGCGGGCCCCTCCGCGGGCAACCCCGCTCCTCCGGAATCGGCACCGCCTTGTAAGCGGGCGCCGACCCTGTGGGCGCGGGCTGCCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCg < 1:867669/150‑1 (MQ=255) ccTGGGCCGGCCTCTTCGGGGGCAAGCCCGCACCTCCGGAATCTGCACCGCCTTGTAATCCGGCGCCGACCCTGTGGGCGCGGGCTGGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCaaa < 1:1761245/150‑1 (MQ=255) cTGTGCCGGCCTCTTCGCGGGCCAGCCCGCTCCTCCGGAATCTGCACCGCCTTGTAAGACGGCGCCGACCCTGGGGGCGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAac < 2:2850262/150‑1 (MQ=39) ggccacccccGCCCCCCCGGAACGTGCACCGCTTTTAACTCCGGCGCCGCCCGGGGGGGGGCGGGCGCCCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGcc < 1:2364123/143‑1 (MQ=255) GGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGcc < 2:4356581‑M1/150‑1 (MQ=255) GGCAAGCCCGCTCCTCCGGAATCTGCACCGCCTTGTAATCCGGCGCCGACCCTGTGGGCGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGcca > 2:3040426‑M1/1‑150 (MQ=255) GGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGcca < 2:3217883‑M1/150‑1 (MQ=255) CAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccacc < 1:2505067‑M1/150‑1 (MQ=255) AAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccacca < 2:5433155‑M1/150‑1 (MQ=255) gcccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccGGCACAGGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccaccacc > 1:1225504‑M2/78‑150 (MQ=255) gcccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccGGCACAGGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccaccacc > 2:2755105‑M2/78‑150 (MQ=255) gcccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAac > 1:2598955‑M2/78‑126 (MQ=255) gcccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAac < 2:2598955‑M2/49‑1 (MQ=255) gcccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccaccacc > 2:1012390‑M2/78‑150 (MQ=255) cccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACGTCCACCAGGCTGGccaccacca > 2:1986646‑M2/77‑150 (MQ=255) ccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCAt > 1:1614001‑M2/76‑150 (MQ=255) ccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCAt > 2:2404394‑M2/76‑150 (MQ=255) CCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCAt < 2:3889762‑M1/150‑1 (MQ=255) CCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCAt < 2:2382646‑M1/150‑1 (MQ=255) CCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCAt < 2:2382317‑M1/150‑1 (MQ=255) cgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCAtc > 2:2245221‑M2/75‑150 (MQ=255) CGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCAtc > 1:3217852‑M1/1‑150 (MQ=255) TCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGTGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCg < 1:5245773‑M1/150‑1 (MQ=255) TCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCg < 1:3257540‑M1/150‑1 (MQ=255) TCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCg < 1:4604572‑M1/150‑1 (MQ=255) CTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGcc < 1:2614018‑M1/150‑1 (MQ=255) CTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGcc < 1:4507805‑M1/150‑1 (MQ=255) tACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCaaa < 2:4223689/116‑1 (MQ=255) tACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGccc > 2:2057779/1‑150 (MQ=255) tACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGccc > 1:4861119/1‑150 (MQ=255) tACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGccc > 1:381160/1‑150 (MQ=255) acagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCa < 1:4282665‑M2/83‑1 (MQ=255) aCGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCa > 2:2436780/1‑150 (MQ=255) ggAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATg > 2:3949055/1‑150 (MQ=255) tCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGcgcg > 1:1978964/1‑150 (MQ=255) gccccGCCTTTTAATCCGGCGCCCCCCCGGGGGGCGGGGGCGTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCgcgtgc < 1:2500911/147‑1 (MQ=255) gCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTgcg > 1:320255/1‑90 (MQ=255) aCCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCgcgtgcgt < 1:5599550/150‑1 (MQ=255) ccGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGcgtgcgtg > 2:4130034/1‑150 (MQ=255) cGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCgtgt < 2:4507816/150‑1 (MQ=255) cGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCgtgt > 2:2162170/1‑150 (MQ=255) cTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTg > 2:4027393/1‑150 (MQ=255) ttGTAATCCGGCGCCGCCCCGGGGGGAGCGGGCTGGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGt < 2:1233486/150‑1 (MQ=255) ttGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGt > 1:5121828/1‑150 (MQ=255) ttGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGt > 2:4961366/1‑150 (MQ=255) ttGTAATACGGCGCCGACCCGGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTga > 2:800324/1‑149 (MQ=255) aaTACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAg > 2:851365/1‑150 (MQ=255) aaTACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAg > 1:278610/1‑150 (MQ=255) aCGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTgg > 1:1220994/1‑150 (MQ=255) cGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGc < 2:5126409/150‑1 (MQ=255) ggCGCCCCCCCGGTGGGCGCGGGCTGCCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCa < 1:3918595/150‑1 (MQ=255) gcgcCGACCCTGTGGGTGGGGGGTTGCCCGCGAAGTGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACTCATCCACCAGGCTGGCCTCCTGGTTCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCAc < 2:1717910/150‑1 (MQ=255) cGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGgc > 2:3588150/1‑150 (MQ=255) cGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGgc < 2:1600529/150‑1 (MQ=255) gACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGgcg > 1:467440/1‑150 (MQ=255) ccTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGa < 1:3588150/150‑1 (MQ=255) gtgGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGc < 2:3789685/150‑1 (MQ=255) tgGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATccac > 1:990745/1‑85 (MQ=255) tcttcgcgggcaagcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCg > 1:4931002‑M2/29‑150 (MQ=255) ttcgcgggcaagcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGt > 2:2465195‑M2/27‑150 (MQ=255) ggcgcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGt < 1:3156083‑M2/124‑1 (MQ=255) ggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGt > 2:3567219‑M2/27‑150 (MQ=255) gagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGtt < 2:3382856‑M2/125‑1 (MQ=255) agcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTg > 1:1709017‑M2/25‑150 (MQ=255) cgggctggcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCa < 1:3624876‑M2/128‑1 (MQ=255) gggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAg < 2:3861238‑M2/129‑1 (MQ=255) ctggcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGAc < 1:2537498‑M2/132‑1 (MQ=255) ccccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTAc < 1:5175034‑M2/135‑1 (MQ=255) ccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGAt < 2:1217801‑M2/119‑1 (MQ=255) ccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGAt > 1:1217331‑M2/14‑132 (MQ=255) ccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAt < 2:3322473‑M2/137‑1 (MQ=255) ccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAt > 1:5323337‑M2/14‑150 (MQ=255) ccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAt > 2:56961‑M2/14‑150 (MQ=255) gcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCt > 1:3065270‑M2/12‑150 (MQ=255) cgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCgcgtgc < 2:4626130‑M2/92‑1 (MQ=255) gaagaggccGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTc < 1:1012390‑M2/141‑1 (MQ=255) gaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTc < 2:5076414‑M2/141‑1 (MQ=255) gaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTc < 2:939234‑M2/141‑1 (MQ=255) gaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTc > 2:257406‑M2/10‑150 (MQ=255) gaggccGGCACAGGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTcgcg < 1:2755105‑M2/144‑1 (MQ=255) aggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCgcgc < 1:2404394‑M2/145‑1 (MQ=255) ggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCt < 1:1141391‑M2/146‑1 (MQ=255) gccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTc > 2:1289770‑M2/4‑150 (MQ=255) ccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCg > 1:4135280‑M2/3‑150 (MQ=255) cAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCGa > 2:1159354‑M2/2‑150 (MQ=255) cAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCGa < 1:2932877‑M2/149‑1 (MQ=255) aGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGc < 2:3124374/66‑1 (MQ=255) | GAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCGA > NC_002947/1911618‑1911915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |