| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,952,799 | G→C | 9.3% | intergenic (‑68/+102) | PP_1748 ← / ← PP_1749 | hypothetical protein/acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,952,799 | 0 | G | C | 9.3% | 301.2 / 3.0 | 115 | intergenic (‑68/+102) | PP_1748/PP_1749 | hypothetical protein/acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (47/54); new base C (5/7); total (52/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 117 total aligned reads displayed.
CGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTC > NC_002947/1952650‑1952948 | cGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCg < 2:4283673/150‑1 (MQ=255) ggTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCCGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGc < 2:2955601/150‑1 (MQ=255) ggTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGc < 1:3136988/150‑1 (MQ=255) ggTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGc < 2:1089314/150‑1 (MQ=255) gTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TGAAAATTTTGCAGTCTTGTGGGAGCGGCCCGGTGT‑CGCGCAACGGCCGCa > 2:589416/1‑150 (MQ=255) gCTGGGGATGTCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCg < 1:1152337/150‑1 (MQ=255) gCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCg < 1:380773/150‑1 (MQ=255) tGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCACAGCGGc > 1:3285715/1‑150 (MQ=255) ggATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGcccc < 1:5557241/150‑1 (MQ=255) aTGGCGAGCTTTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTGGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑gg < 1:4843380/150‑1 (MQ=255) gcgcgcTTTTCCCGCAGCACGGTTTTGAGTTCGTCGTGATGGGGTTGGGGG‑TGTGGTTGGGCCTTGTCCCGGCCTCGGGTGGGG‑TTAAATTTTTGCGGTCTTGTGGGAGCGGCCTTGTGT‑GGCTAATGGGCCGCAACGCGGCCCC‑GGCaa < 2:2386398/150‑1 (MQ=255) gAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGGCGTGTGG‑GGGGGAAGGGGCGCCAAGCGGCCCC‑GGcccga > 1:1834666/1‑146 (MQ=255) ccAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTTGGAGCGGGCGTGGTT‑GGCGGAATGGGCGCGAAACGGCCCC‑GGCAAAATCGGcccc > 1:4557536/1‑147 (MQ=255) ccAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTGTGT‑CGCGCAAGGGCCCCAAAACCGCCCC‑CGCAAAATAGGCAGc > 2:1300335/1‑150 (MQ=255) gcagcaCGCGTTTGAGATTGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGaa < 1:5112917/150‑1 (MQ=255) gcagcaCGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAATTTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGaa < 2:2659379/150‑1 (MQ=255) gcagcaCGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAACGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGaa < 1:5112902/150‑1 (MQ=255) agcaCGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGc < 2:2264739/150‑1 (MQ=255) gaaggcttttGAGTTCGTGTAGATGGGGTTGGGGG‑AGTCGTTCGTACATGTCCTGTCCTCGGTTCGGT‑TTAAAATTTGGCCGTGTTGTGGGAGCGGCCTGTTGT‑CGCGAAGGTGCCTCAAAGCGGCCCC‑GTCAATATCGGCAGCGAAGCt < 2:962458/143‑1 (MQ=255) caggcgTTTGAGATAGTCGAGAGGGGGTGCGGGG‑AGTCGTTCGGAAATGTCCAGGCCTCCGGTCGGT‑TTAAAATTTTGCTGTGTTGTGGGTGCGGCGTTGTGT‑CGCGAAAGGGCCGAAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTg < 1:1235668/147‑1 (MQ=255) cacggttttGAGATCGTCTTGAGCGGGTTGGGGG‑AGTCTTTCGGACTTGTCCAGGCCTCGGGTGGGT‑TTAAAATTTGGCCGTCTTGTGGGAGCGGCCTTGGGT‑CGCGAACGGGCCCCAACGCGGCCCC‑GGCAATATCGGCAGCGAAGCTg < 1:2926243/144‑1 (MQ=255) aCGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGc > 1:5561147/1‑124 (MQ=255) aCGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGc < 2:5561147/124‑1 (MQ=255) aCGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCATTTTT‑AGCGAAATGGCCCCCAAACCGCCCC‑CGCAAAAAAGGCACCGaaccaga > 2:663286/1‑145 (MQ=255) aCGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGACCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGGCGTTTGT‑GGGGGAAAGGGCGCCAAGCGGCCCC‑CGCAAAAAAAGCAGCGaaccaga > 1:1327361/1‑145 (MQ=255) gcgTTTGTGATAGTCGAGTTCGGGTTCGGGG‑ATTCTTTCGGACTTGTCCAGGCCTCCGTTCGGG‑TTAAAATTTTGCTGTCTTGTGGTAGCGGCCTTGTTT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTgaga < 2:5300478/150‑1 (MQ=38) gcgTTTGAGATAGTCGAGATGGGGTTCGGGG‑AGTCTTTCGGACTTGTCCTGGCCTCCGTTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTgaga < 2:5300151/150‑1 (MQ=38) ttGAGATCGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGT‑TTAAAATTTTGCCGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCAC‑GGCAATATCGGCAGCGAAGCTGAGACCCt < 2:3214043/150‑1 (MQ=255) ttGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTGCGGACATGTCCCGGCCTCCGGTGGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCAC‑GGCAATATCGGCAGCGAAGCTGAGACCCt < 2:3213771/150‑1 (MQ=255) agaTAGTCGAGCTGGGGTTCGGGG‑AGTCGTTCGGACATGTCCTGGCCTCCGGTCGGT‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGGGT‑GGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAgg < 2:3775839/150‑1 (MQ=38) tatcgTCGTGATGGGGTTGGGGG‑AGTGGGTCGGACTTGTCCAGGCCTCGGGTGGGT‑TTAAAATTTTGCTGTGTTGTGGGAGCGGCGTTGTGT‑GGCGAACGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAggg < 1:4401848/146‑1 (MQ=25) gaTCGTCGCGAGCGGGTTCGGGG‑AGTCGTTCGGACAGGGCCAGGCCTCCGGTGGGG‑TTAAAATTTTGCCGTCTTGGGGGAGCGGCCTGGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAggg < 1:4157081/150‑1 (MQ=38) tAGTCGAGTTGGGGTTCGGGG‑AGTCGTTCGTACTTGTCCTGGCCTCCGGTGGGG‑TTAAATTTTTGCTGTGTTGTGGGAGCGGCTTTGTTT‑CGCGAAAGGGCCGAAATGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGgc < 1:5481969/150‑1 (MQ=255) gTCGTGATGGGGTTGGGGG‑AGTCGTTGGGAATGGTCCCGGCCTCGGGTGGGT‑TTAAAATTTGGCTGTCTTGTGGGTGCGGCCTTGTGT‑CGCGAAAGGGCCGAAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGgcgc < 1:3962996/150‑1 (MQ=21) gctggggTGCGGGG‑TGGGGTTCGGACTGGTCCCGGCCTCGGGTGGGT‑TTAAATTTTTGCCGTGGTGGGGGCGCGGCGTTGTGG‑GGCGACCGGGCCGCAACGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGc < 1:3814584/146‑1 (MQ=255) gaTCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGGCGTGTGT‑GGCGGAAGGGGCGCAAAACCGCCCC‑CCCCAAAAACGCAACCAACCAGAGACCCCAGGGgcgcggagc > 1:5591420/1‑145 (MQ=255) aTCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGGCGTGTGT‑GGCGAAATGGCCCCAAACCCGCCCC‑CGCAAAAAAGGCCGCCCACCTGAGTCCCAAGGGGGGCGTAGCa > 2:2839098/1‑150 (MQ=255) cGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCAcc < 2:3550791/150‑1 (MQ=255) cGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGG‑CGCGACAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCAcc < 2:3550792/150‑1 (MQ=255) gggTTTGGGGTAGTCGTTGGTAATTGTCCCGGCC‑CCGGTTGGGTTTAAATTTTTGCAGTCTTGTGGGCGCGGCCTTGTGT‑CGCTAACGGGCCCCAAAGCGCCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCAcc < 1:540189/150‑1 (MQ=255) gTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGGCCAGTTTGCCGGAATGGGCCCCAAACCGCCCCC‑GCCAA‑ATACGCCCCCCAGCGGTGAACCAACGGGCGCGTCGCAccccc > 2:1018588/1‑149 (MQ=255) gTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTGGTG‑CGCGAAAGGGCCGCAAACCGGCCCC‑CGCAAAAAAGGCCGCGAAGCGGGGGACCCAGGGGCGCGTAGCACCCCa > 2:4069721/1‑150 (MQ=255) gggg‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTTT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATAGGCAGCGAAGCTGAGACCCAAGGGGCGCTTAGCAcccccatcg > 2:5075327/1‑145 (MQ=38) ggg‑gGTCGTTCGGACTGGGCCCGGCCTCGGGGCGGG‑TTAAATTGTTGCAGTCTTGTGGGCGGGGCGGGGTGG‑CGCGAACGGGCCGCACCGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTcgc < 1:5331908/150‑1 (MQ=255) g‑AGTCGTTGGGACATGTCCAGGCCTCCGGTCGGG‑TAAAAATTTTGCCGTCTTGTGGGCGCGGCCTTGTGT‑CGCGAACGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGa < 2:2034609/150‑1 (MQ=38) g‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAGAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGa < 2:2034539/150‑1 (MQ=255) cgTCGTTCGGACAGGGCCCGGCCTCCGGTCGGG‑TTAAAATTTGGCCGCCTGGTGGGAGCGGCCGGGGGG‑CGCGAACGGGCCGCAACGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGac < 1:4078524/149‑1 (MQ=255) tCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTTTGT‑CGCGAAAGGGCCGCAAAACCGCCCC‑CGCAAAATAGGCAGCCAAACAGAGAACCAACGGGCGCGGAGCACCCCCATAGCGacac > 2:1616845/1‑150 (MQ=255) gTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCATGTGT‑GGCGCAAGGGCCGCAAAGCCGCCCC‑CCCCAAAAAGGCACCGCACCGGAGACCCGAGGGGCGCGGAGCCCCCCCATCGCCACACaa > 2:1660214/1‑150 (MQ=255) ttCGTACTTGTCCTGGCCTCGGGTGGGT‑TTAAAATTTTGCAGTCTTGTGGGCGCGGCCTGGGGT‑CGCGACCGGGCCCCAACGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAg < 1:1041347/150‑1 (MQ=255) gtCGGACCGGTCCCGGCCGCCGGTCGGG‑TTAACATTTGGCAGTCTGGTGGGAGCGGCGTTGTGT‑CGCGAACGGGCCGCAACGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAg < 2:3285715/149‑1 (MQ=255) gACATGTCCAGGCCTCCGGTCGGG‑TTAAAATATTGCAGTCTTGTGGGAGCGGCCGTTTGT‑GGCGAAAGGGCCGCCAATCGGCCCC‑CGCAAAAAGCGCACCCCAGCAGAGAACCAACGGGCCATGCGCACCCCAATCGCCACACCACGCCg > 2:1840342/1‑150 (MQ=255) tCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCCATATCGGCAGCGACGCGGAGACCCAAGGGGCGCGTCGCACCCCATTCGCGACACAAGGCCCCTCCca > 2:3177807/1‑150 (MQ=37) ggCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCATGTGT‑GGCGAAAGGGCCCCAAACCGGCCCC‑CGCCAAAAAGGCAACGGATCGGAGAACCCACGGGCGCGGAGCCCCCCCATCCCGACACAAAGCCCCGccccccaa > 2:773360/1‑145 (MQ=255) ccgcgggTGGGT‑TTAAATTTTTGCCTTCTTGGGGGTGCGGCCTTGGGC‑CGCGAACGGCCCGAAACGCGGCCCC‑GGCAATATCGGCAGCGATGCTGAGACCCTCGGGGCGCTCCGCACCCAATTCGCGACACAAGGCCGCTCCCACaaaaa < 2:1327361/145‑1 (MQ=21) ggTGGGG‑TTAAATTTTTGCAGTGTTGTGGGTGGGGCGTTGGGT‑CGCTACCGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGACGCTGAGACCCTCGGGGCGCTTCGCACCCCTTTCGCGACAAAAGGCCGCTCCCACAAAAAGCCGa < 2:2687624/150‑1 (MQ=21) ggcGGG‑TTAAATTTTTGCGGTCTTGTGGGAGGGGCCTGGGGT‑CGCGAATGGGCCGCATCGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTTGGGGCGCTACGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAg < 2:4604319/148‑1 (MQ=25) ggggttttAAATTTTTGCTTTCTTGTGGTCGCGGCCTTGTGT‑CGCTAACGGGCCGAAACGCGCCCCC‑GGCAATTTCGGCAGCTACGGTGAGACCCGCGGGGCGCTTCGCACCCCTTGCGCGACACACGGCCGCTCCCACAAAAAGCCGAg < 2:1970421/144‑1 (MQ=255) aatttttGCTGTGTTGTGGTTGGGGCGTTGTGT‑CGCGAACGGGCCCCAACGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTCGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCa < 1:3672485/147‑1 (MQ=25) aatttttGCCTTCTTGTGGTCGCGGCCTGTTGT‑GGCGAACGGGCCGAAACGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCa < 1:3672632/147‑1 (MQ=25) aTTGTGCCGTCTGGTGGGAGCGGCCTTGTGT‑CGCGACCGGGCCGCAACGCGGCCCC‑GGCAATATCGGCAGCGACGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAgg < 2:5602297/150‑1 (MQ=25) ttttGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTc > 1:342322/1‑95 (MQ=255) tCTTGTGGGAGCGGCCTTGTTT‑AGCGAAAGGGCCGCAAATCCGCCCC‑CGCAAAATAGGCCGCGAAGCTGAGACCCAAGGGGCGCTTCGCACCCCAATAGCCACACAAGGCCGCTCCCACAAAAAACCCAGCAGTTGTCAGGCCAAcgccc > 2:4860675/1‑150 (MQ=21) gttGGGGGCGCGGCCTGGGGG‑CGCGAACGGGCCCCAACGGGGCCCC‑GGCAATATCGGCCGCGAAGCTGAGACCCTCGGGGCGCTTCGCACCCCAGTCGCGACAAAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAAcggccg < 2:4402045/149‑1 (MQ=255) ctggtgGGAGCGGCCTTGGGT‑CGGTACTGGGCCGCAACGGGCCCCG‑GGCAATATGGGCAGCGACGCTGAGACCCTCGGGGCGCTTCGCACCCCTTCCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAAcggccg < 2:4402067/147‑1 (MQ=25) gtgGGAGCGGCCTTGTTT‑CGCCAAATGGCCGCAAAGCGGCCCC‑GGCAATATAGGCAGCGCAGCTGATACCCGAGGGGCGGTTAGCACCCCAATCGCGACACAAAGCCCCAAACAAAAAAAGCCGAGAAGTAGTCAGGCCAAcggccggca > 2:465609/1‑149 (MQ=21) tgGGAGCGGCCGTTTGT‑CGCGAAATGGCCGCAAAGCGGCCCC‑CGCAAAATAGGCACCCAAGCTGAGACCCAAGGGGCGCTTAGCACCCCATTCGCGACACAAGGCCGCTCCCACCAAAATCCGAGCACTTGTCACGCCAAcggccggcga > 2:1303236/1‑148 (MQ=25) ggggggCGTTGTTG‑CGCGACGGGGCCCAAATGGGGCCGC‑GGCTTTTGCGGCAGCTCCGGTGACACCGTGGGGGGGCTTCGAACCCCATCGGCCACAATTGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATgg < 2:232858/146‑1 (MQ=255) gAGCGGCCTTGTGT‑CGCGAAAGTGCCGCAAATCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGGGCTTCGCACCCCATTCGCGTCACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTAttg > 2:4244581/1‑148 (MQ=255) cGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGt < 2:1152960/126‑1 (MQ=255) cGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGt > 1:1152960/1‑126 (MQ=255) ccTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGTTATGGGGAAAc > 1:5348108/1‑150 (MQ=255) ccTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAc > 1:5193016/1‑150 (MQ=255) ttGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAACGCCCAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcag > 2:3755175/1‑150 (MQ=255) ttGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcag > 1:5386572/1‑150 (MQ=255) gtgt‑CGCTAACGGGCCGAAACGGGGCCCC‑GGAAATTTCGGCAGGGAAGCTTAGACCCTCGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcagca < 2:4851593/150‑1 (MQ=37) ggggcgctAACGGGCCCCAACGCGCCCCC‑GGCAATATCGGCAGCGACGCTGACACCCTCGGGGCGCTTCGCACCCCATCCGCCAAACACGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcagca < 2:4851574/146‑1 (MQ=255) gt‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAgg > 2:4119391/1‑150 (MQ=255) ggccgcgACCGGGCC‑CAAACGGGCCCCGGGCAATAGCGGCCCCGACGCTGAGCCCCTTGGGGCGCTCCGCACCCCTTCCGCGACACACGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcagcag < 2:544058/147‑1 (MQ=255) gcgAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCg > 1:1246386/1‑150 (MQ=255) gcgAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCg > 1:2815500/1‑150 (MQ=255) gcgAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCg > 1:3088168/1‑150 (MQ=255) gcgAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCg > 2:2236259/1‑150 (MQ=255) gcgAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCg > 1:4100704/1‑150 (MQ=255) gcgAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCg > 2:3163404/1‑150 (MQ=255) gAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGAt > 2:2622583/1‑150 (MQ=255) gAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGAt > 2:562198/1‑150 (MQ=255) gAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGAt > 1:2338644/1‑150 (MQ=255) aaaGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATa > 2:4637603/1‑150 (MQ=255) cggggCCGCGTTGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCAATAGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATaa > 1:4224856/3‑150 (MQ=39) ggggCCGCTTTGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATaaa > 2:1843264/2‑150 (MQ=255) ggggCCGCTTTGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATaaa > 2:1843497/2‑150 (MQ=255) ggcccGCAAGGGGTCCCG‑GGCTATTGCGGCTTCGATGCTGAGACCCTAGGGTCTCTTCGCACCCAATGCGGGACACACGGCCTCTCACACAAATTGCCGAGCAGTTGTCAGGCCAACTGCCGGCTATGTGGAAACAGCAGGTCTATaaca < 2:5481946/147‑3 (MQ=255) ggCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAAc > 1:1722481/1‑150 (MQ=255) ccGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGa < 1:212205/97‑1 (MQ=255) ccGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGa > 2:212205/1‑97 (MQ=255) ccGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGc > 1:2087757/1‑150 (MQ=255) ccGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGc > 2:4451820/1‑150 (MQ=255) cGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCt > 1:1261361/1‑150 (MQ=255) gCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTc > 1:1122901/1‑150 (MQ=255) | CGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGG‑AGTCGTTCGGACATGTCCAGGCCTCCGGTCGGG‑TTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCAAAGCGGCCCC‑GGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTC > NC_002947/1952650‑1952948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |