| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,059,725 | A→C | 6.0% | intergenic (‑208/+100) | PP_2666 ← / ← PP_2667 | hypothetical protein/ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,059,725 | 0 | A | C | 6.0% | 432.6 / 13.2 | 144 | intergenic (‑208/+100) | PP_2666/PP_2667 | hypothetical protein/ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base A (26/108); new base C (7/2); total (33/111) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.10e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.25e-01 | |||||||||||
Only 100 of 148 total aligned reads displayed.
GACGATAGACAGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGAGG > NC_002947/3059577‑3059870 | gacgaTAGACAGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAg > 1:5586907/1‑150 (MQ=255) aCAGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCGTGCGGCGCGGAAGGGGCCCGCACCCGCCCCa > 2:3750921/1‑150 (MQ=37) cAGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAg < 1:1174971/150‑1 (MQ=255) aGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAg‑g < 2:5586907/150‑1 (MQ=255) tAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGGGGGGGGTCGGGGGAGGGGCGCCCCGCGGccccccgcg > 2:1564914/1‑145 (MQ=25) tAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGGCGTGCGGCGCGAAAGGGCCGCGCCGCGGcccccccaa > 2:5387334/1‑145 (MQ=38) tAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATGTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCGCGCGGGGCGCCAAGGCCGCCCCCCGGcccccgccg > 2:5387142/1‑145 (MQ=25) aTGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GAtctc < 2:2496099/150‑1 (MQ=255) aTGCAGTAAGAAAGGAGTAGATGGCCGGGCGCCTGAAGCCATGGACACGCCCTAGGCAGCAACTGACTTGCTCAATTTCTGAAAGCTGCCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GAtctc < 2:5451117/150‑1 (MQ=37) tAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTTCGTCGCGTAATGGCCCCGCACCGGCCCCAC‑GATATAGGcataaat > 2:2331498/1‑146 (MQ=25) tAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATg < 1:4016910/150‑1 (MQ=255) gtagtaGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATa < 2:5528686/150‑1 (MQ=255) aTGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCt < 1:2472147/150‑1 (MQ=255) aTGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCt < 1:5295934/150‑1 (MQ=255) aTGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCt < 1:1794246/150‑1 (MQ=255) gCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTggg < 1:1799677/150‑1 (MQ=255) ccGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GAtctc > 1:4724368/1‑126 (MQ=255) ccGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GAtctc < 2:4724368/126‑1 (MQ=255) ccGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTgggg < 1:5364299/150‑1 (MQ=255) cTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTg < 2:3598543/150‑1 (MQ=255) cTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTg < 2:273576/150‑1 (MQ=255) gAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATGTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCg < 1:4252184/150‑1 (MQ=255) aGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGc < 2:3960513/150‑1 (MQ=255) ggCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGcc < 2:659184/150‑1 (MQ=255) ggCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGcc < 1:3840933/150‑1 (MQ=255) gCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGccc < 1:3347990/150‑1 (MQ=255) gCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGccc < 2:1594766/150‑1 (MQ=255) cATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCAAAGCGGcccc < 2:4624315/150‑2 (MQ=255) aTGGAGTCGCCCTAGTGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGACGCGCAGCGGCCCCAG‑GATCTCGTCATCATGCATAGATTGCAGGGGCCGCAAAGCGGcccca < 2:4761872/150‑3 (MQ=25) aTGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGTGGCCTTGCGTCGCGAAAGGGCCGCGCAGCCGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCATTGCGGcccca > 1:449759/1‑148 (MQ=255) aTGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCAAAGCGGcccca < 2:5625217/150‑3 (MQ=255) aTGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCAAAGCGGcccca < 2:5625169/150‑3 (MQ=255) agaCGCCCTAGGGAGCAACTGTCTTGCTCAATGTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATcgc < 1:2304982/150‑1 (MQ=255) aCGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGa < 1:3080206/150‑1 (MQ=255) aCGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGa < 1:3080327/150‑1 (MQ=255) aCGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGa < 1:2177247/150‑1 (MQ=255) aCGCCCTAGCGAGCAACTGTCTTGCACAATTTCAGAAACCTGGCGCGATCCCTGTGGGAGCGGCCTTGCCTCGCGAAACGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCAGGGGCCGCTTTGCGGCCCAATCGCGa < 2:3023275/150‑1 (MQ=38) cccTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGacac < 2:4794534/150‑1 (MQ=255) cTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACaa < 2:3900584/150‑1 (MQ=255) aGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAgg < 2:5591751/150‑1 (MQ=255) aGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAgg < 1:1964427/150‑1 (MQ=255) gggAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGc < 1:2903107/150‑1 (MQ=255) ggAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGcc < 2:1831967/150‑1 (MQ=255) ggAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGcc < 2:500523/150‑1 (MQ=255) cTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCca < 2:2319470/150‑1 (MQ=255) tCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCacac < 2:102721/150‑1 (MQ=255) tCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCacac < 2:102783/150‑1 (MQ=255) ttGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACgg < 2:2571493/150‑1 (MQ=255) tGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACggg < 1:3682177/150‑1 (MQ=255) ctctttttCTGAATGCTGGCGCGATCCGTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGtt < 1:2090835/145‑1 (MQ=255) aaTTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCAt > 1:321087/1‑89 (MQ=255) aaTTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCAt < 2:321087/89‑1 (MQ=255) tCTGACAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGCTTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGcc < 2:5185482/150‑1 (MQ=255) tCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCGTGCGGGGCGGAAGGGCCGCCCAGCCGCCCCCC‑GGTCGCGGCCTCAAGCCTAGATTTCTGGGGGCGCGTTGCGGCCCCAACCCGCCACCAGGCCGCACCCACACCGGGTACAAGcc > 2:4202839/1‑150 (MQ=255) tGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAg < 2:2567500/150‑1 (MQ=255) gAAAGGGGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATTGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACACGGCCGCTCCCACACGGGTTACACGCCAgg < 1:136896/150‑1 (MQ=255) gCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGtttt < 1:1302905/150‑1 (MQ=255) cTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTc < 1:5583231/150‑1 (MQ=255) cTGTGGGAGCGGCCTTGCGTCGCGAATGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTgc < 1:1228867/150‑1 (MQ=255) tgtgGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTgcg < 1:2965221/150‑1 (MQ=255) gggAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAg < 2:3708662/150‑1 (MQ=255) ggCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACCGGTTACACGCCAGCTTTTCAGCGCGGCTTGCGCAGCGCTGc > 1:4712995/1‑150 (MQ=255) gCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACACGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCa < 2:4230119/150‑1 (MQ=255) ttGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGc > 1:766715/1‑150 (MQ=255) ttGCGTCGCGAAAGGGCCGCGCAGCGGCCACAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGAGCGGCTTGCGCAGCGCTGCATGc > 1:5032687/1‑150 (MQ=255) gCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACAAGCCAGGTTTTCAGCGCGGCTTGCGCATCGCTGCATGCTg > 1:3955178/1‑150 (MQ=255) gTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTggg > 1:2308190/1‑150 (MQ=255) gTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTggg < 1:4333797/150‑1 (MQ=255) tCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTgggg < 2:2779403/150‑1 (MQ=255) cgAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATCGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGtt < 1:2616660/150‑1 (MQ=255) aaaGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGa < 2:4024831/150‑1 (MQ=255) tggggCCGCTGCGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGaa > 1:49761/3‑150 (MQ=255) tggggCCGCTGCGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGaa > 1:3530171/3‑150 (MQ=255) aaGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCACTCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGaa < 1:3132828/150‑1 (MQ=255) aaGGGCCGCGCAGCGGCCCCAG‑GACCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGCTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGaa < 1:627184/150‑1 (MQ=255) ggggCCGCTGCGCGGCCCTAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAg > 1:486169/2‑150 (MQ=255) ggggCCGCTGCGCGGCCCTAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAg > 1:486292/2‑150 (MQ=255) aGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAg < 1:2161247/150‑1 (MQ=255) ggCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGt < 1:4546421/150‑1 (MQ=255) ggCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGt < 2:123240/150‑1 (MQ=255) ggCCGCGCAGCGGCCCCAG‑GAGCGCGGCATCCGGCATAGATGGCGGGGGCCGCGTTGCGGCCCAATCGCGACACACGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGt < 2:123231/150‑1 (MQ=255) gccgcgccgcGGCCCCAG‑GCTCTCGGCATCATGCATCGATGGCTGGGGCCGCTTTGCGGCCCAATCGCGACACCCGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTg < 1:5214277/150‑1 (MQ=255) gCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTg > 2:3049565/1‑150 (MQ=255) gCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTg > 2:3864501/1‑150 (MQ=255) ccgcgccgcgGCCCCAG‑GATCTCGGCATCCTGCATAGATGGCGGGGGCCGCTTTGCGGCCCAATCGCGACACCAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 1:105956/150‑1 (MQ=255) ccgcaaaGCGGCCCCAGCAATCTATGCATGATGCCGAGA‑TCCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa > 2:1374884/7‑150 (MQ=18) ccGCGCAGCGGCCCCTG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 1:1553494/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑TATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 1:1428380/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 2:734045/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 1:623893/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 2:1745890/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 2:1452521/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa > 1:5445419/1‑150 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 1:3858366/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 1:1146896/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTAAGCGCGGCTTGCGCAGCGCTGCAAGCTGGGGGTTGAAGGTGa > 1:1408376/1‑150 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATACATAGCTTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 1:2707059/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATACATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 1:2706989/150‑1 (MQ=255) cgcaaaGCGGCCCCAGCAATCTATGCATGATGCCGAGA‑TCCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGAg > 2:2428176/6‑150 (MQ=18) gcgcAGCGGCCCCAG‑GAGCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGAgg < 2:3139982/150‑1 (MQ=255) | GACGATAGACAGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGAGG > NC_002947/3059577‑3059870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |