| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,377,810 | C→G | 9.5% | intergenic (+268/+24) | PP_2970 → / ← PP_2971 | hypothetical protein/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,377,810 | 0 | C | G | 9.5% | 585.7 / 15.8 | 201 | intergenic (+268/+24) | PP_2970/PP_2971 | hypothetical protein/transposase |
| Reads supporting (aligned to +/- strand): ref base C (108/71); new base G (3/19); total (111/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.51e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 209 total aligned reads displayed.
GTTGTTTATGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACTTGCCGCCCAT > NC_002947/3377661‑3377959 | gttgttTATGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAg‑c > 1:3452047/1‑150 (MQ=255)gttgttTATGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAg‑c < 1:317596/150‑1 (MQ=255) tttATGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAg‑cggcg > 1:3991882/1‑150 (MQ=255) ttATGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGa > 2:5521070/1‑150 (MQ=255) tGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTc < 2:3682131/150‑1 (MQ=255) tGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTc < 2:1164283/150‑1 (MQ=255) tGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTc < 2:3992975/150‑1 (MQ=255) tGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTc > 2:3981680/1‑150 (MQ=255) gggCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCg < 1:5538508/150‑1 (MQ=255) gggCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCg > 1:1759196/1‑150 (MQ=255) gggCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCg < 2:359971/150‑1 (MQ=255) gCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGc < 2:1194054/150‑1 (MQ=255) gCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGc > 2:2978827/1‑150 (MQ=255) gCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCG‑CCGCTGCAGAGGGCGATTCgga < 2:5041830/150‑2 (MQ=255) cACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGcc < 2:3100610/150‑1 (MQ=255) aCCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGccc < 2:2640001/150‑1 (MQ=255) cTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCAc > 1:4711767/1‑150 (MQ=255) tCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACt > 1:1973487/1‑150 (MQ=255) tCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACt > 2:340370/1‑150 (MQ=255) tCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACt > 1:3002950/1‑150 (MQ=255) gAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTcc > 2:3120768/1‑150 (MQ=255) aaCGCGAGGTTTTCAGTGAATCGGACCGCCAAATGATGGCCATTATCGATTTCGGTTCTATTTCTGCGGCTAATCACCGGTTTCTGGGCGGTGTCGCCCCTTTTTTCTTCCGAATCGCCCTCTGCTG‑GGGCGATTCGGCCCACTCCGGGc < 2:3573438/150‑1 (MQ=255) cgAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCa > 1:1879081/1‑150 (MQ=255) gtttttCTGTGAATCCGACCGCAAAATGAGGGCCATGATCTAATTCGGTTCGATTTGTGCGGCGAATCACGGCTTTCTGGGGGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCTATTCGGCCCACTCCGGGCGTCAGaa < 2:4279086/148‑1 (MQ=255) tttCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGc > 2:4404820/1‑150 (MQ=255) ctgTGAACCCGACCGCCATTTGTTGGCCCGGATCTACTTGGGTACGATTTCGGCGCCGAACCCCCGCTTTGGGGGGGGGGGCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCTATTCGGCCCACTCCGGGCGTCAGAAGGCCtt < 2:3306406/148‑1 (MQ=255) cAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCtt > 1:3317720/1‑150 (MQ=255) aGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTg > 1:4393521/1‑150 (MQ=255) aGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTg > 1:1281890/1‑150 (MQ=255) gTGATTCCGACGGCCAATGGTGGGCCATGAGCGAATGGGGTGCGTTTTCGGGGGCGACTCCCCGGTTGCGGGGGGGGGGCGCCCGGTTTTGCTTCCGAATCGCCGTCTGCCG‑GGGGGCTGGGGCCCACTCCGGGCGTCAGAAGGCCTTGa < 2:2834532/150‑1 (MQ=255) gTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGa > 1:4609064/1‑150 (MQ=255) gTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGa > 1:2651430/1‑150 (MQ=255) tGAATCCGACCGCCAAATGATGGCCATGATCGAATTGGGTTCGTTTTCTGCGGCGAATCACCGCTTTCGGGGCGGTGTCGCCCCTTTTTTCTTCCGAATCGCCCTCTGCAG‑GGGCGTTTCGGCCCACTCCGGGCGTCAGAAGGCCTTGAt < 1:5043393/150‑1 (MQ=255) gAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGAtt < 2:4644493/150‑1 (MQ=255) aaTCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTc > 2:174756/1‑150 (MQ=255) aTCCCACCGCAAATTGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCTTTTTTCTTCCTAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTcc < 2:810984/150‑1 (MQ=255) gACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGcc > 1:5486165/1‑150 (MQ=255) gACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGcc > 1:4411788/1‑150 (MQ=255) gCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCt > 2:181237/1‑150 (MQ=255) ccAAATGTGGGCCATTTTCGAATTCGGTTGGATTTCTGCGGGGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTGGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTg < 2:2244847/150‑1 (MQ=255) ccAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTg > 2:5390083/1‑150 (MQ=255) tttttgggCCTTTATCGATTTCGGTTCTTTTTCTGCGGCGAAACACCTCTTGCTGGGGGGTGGCGCCCCTTTTTTCTTCCCAACCGCCCTCTGCCG‑CGGCTATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGaa < 2:2385722/144‑1 (MQ=255) tgGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTaca > 2:4079558/1‑150 (MQ=255) ccATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCa > 2:5333912/1‑150 (MQ=255) ggTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTg > 2:3768171/1‑150 (MQ=255) gTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGGGTTGTCGCCCCTTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGt < 2:4445632/150‑1 (MQ=255) ttCTATTTCTGGGGCGAATCACCGCTTTGTGGGGGGTGTCGCCCGGTTTTTCTTCCTAATCGCCCTCTGCTG‑CGGCTTTTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTa < 1:3261347/150‑1 (MQ=255) ttCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTa > 2:1469737/1‑150 (MQ=255) ttCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTa > 2:1775699/1‑150 (MQ=255) ttCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTa > 2:5183730/1‑150 (MQ=255) ttCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTa > 2:2050658/1‑150 (MQ=255) tgcGATTTCTGCGGCGAACCCCCGATTTCGGGGCGGTGGCGCCCCGTTTTTCTCCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTa < 2:3849857/148‑1 (MQ=255) tCGTTTTCTGCGGCTAATCACCGCTTTCTGGGCGGGGTCGCCCCTTTTTCCGTCCGAATCGCCCTCTGCAG‑CGGCTATTCGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAg < 2:2482017/150‑1 (MQ=255) gttttCTGCGGCTAATCACCGATTTCTGGGGGGTGTCGCCCCTTTTTACTTCCGAATCGCCCTCTGCCG‑CGGCGTTCCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCa < 2:2573451/148‑1 (MQ=255) aTTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAg > 1:4912498/1‑150 (MQ=255) ttCTGCGGCGAATCACCGCTTTCGGGGCGGGGTCGCCCCTTTTTTCTTCCGAATCGCCCTCGGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGgc < 2:731335/150‑1 (MQ=255) gcggcgAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGgccgcc > 1:804581/1‑150 (MQ=255) ggctAATCCCGGCTTTGGGGGGGGTGGCGCCCCTTTTTTCTTCCTACGCGCCGTGCGCCG‑GGGCGCTGCGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCcat < 1:1165363/150‑1 (MQ=255) ctaaTCCCCGTTTTGTGGGGGGTGTCGCCCCTTTTTCCTACCGAAACGCCCTCTGCCG‑GGGCTATGCGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCcatca < 1:4377968/148‑1 (MQ=255) gAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCcatcat > 2:1960999/1‑150 (MQ=255) aaTCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCTATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCatcatc < 2:4066291/150‑1 (MQ=255) tCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgt > 2:2836314/1‑150 (MQ=255) cACGGCTTTGTGGGGGGTGTCGCCCCTTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGGGATTGGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtc < 1:5469364/150‑1 (MQ=255) aCCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtca > 2:1869590/1‑150 (MQ=255) ccGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtcat > 1:3746981/1‑150 (MQ=255) cGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCGGCAG‑CGGCTATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtcatc < 1:5118389/150‑1 (MQ=255) gCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtcatcg < 2:3720996/150‑1 (MQ=255) cTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGc > 1:3703781/1‑150 (MQ=255) tcgggggggTGTCGCCCCTTTTTTCTTCCGAATCGCCCTGTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCaaa < 2:4711767/147‑1 (MQ=255) tGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGt > 1:2462403/1‑150 (MQ=255) gggggTGTCGCCCTGTTTTTCTTCCGAAGCGCCCTCTGCCG‑GGGCTTTGGGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTc < 1:3531570/147‑1 (MQ=255) gCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTcg > 2:4589467/1‑150 (MQ=255) gggTGTCGCCCCTTTTTTCTTCCGAAGCGCCCTGTGCGG‑GGGGTTTCCGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTcgc < 1:1157595/149‑1 (MQ=255) cGGTGTCGCCCCTTTTTTCTTCCGACTCGCCCTCTGCCG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTcgc < 2:3002950/150‑1 (MQ=255) gtgtCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTcgcgc < 2:3223302/150‑1 (MQ=255) gtCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCgcgcgc < 2:3452047/150‑1 (MQ=255) cGCCCCTTTTTTCTCCCGATTCGCCCTCTGCTG‑GGGCGATTCGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGccc < 1:5419802/150‑1 (MQ=255) ccccTTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCt < 2:1920453/150‑1 (MQ=255) ccccGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCCTCATCGTCATCGCACAGTTCGCGCGccccg > 2:5437632/1‑149 (MQ=255) ccccGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCt > 1:1026164/1‑150 (MQ=255) cccGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTg > 2:554899/1‑150 (MQ=255) cccGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTg > 1:216021/1‑150 (MQ=255) cccGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTAGCGCGCCCCTg > 2:5232379/1‑150 (MQ=255) cGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTc < 2:1274100/150‑1 (MQ=255) gTTTTTCTTCCGAATCGCCCTCTGCCG‑GGGCTTTTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTcc < 1:1482609/150‑1 (MQ=255) gTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTcc > 2:2600621/1‑150 (MQ=255) tttCTTCCGAATCGCCCTGTTCAG‑CGGCGTTTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGAt < 2:4652475/150‑1 (MQ=255) tttCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGAt < 2:1606176/150‑1 (MQ=255) ttcCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTa > 1:1539364/1‑150 (MQ=255) ggccGAATCG‑CCGCTGCAGAGGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTa > 1:165464/3‑150 (MQ=255) ccGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACg > 1:2865311/1‑150 (MQ=255) ctaaTCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACgg < 1:856027/148‑1 (MQ=255) cGAATCG‑CCGCTGCAGAGGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAgg < 2:4324263/100‑1 (MQ=38) cGAATCG‑CCGCTGCAGAGGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAgg > 1:4324263/1‑100 (MQ=38) aaTCGCCCTCTGCCG‑CGGCGATTCGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGAt < 2:505663/150‑1 (MQ=255) aaTCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGAt > 2:4215041/1‑150 (MQ=255) ccTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACtt > 1:419554/1‑150 (MQ=255) ctGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTATAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACTTgcc > 1:5370728/1‑150 (MQ=255) aG‑CGGCTATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACTTGCCGccc < 1:340370/150‑1 (MQ=255) g‑cggcgATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACTTGCCGCCCa > 2:3515660/1‑150 (MQ=255) | GTTGTTTATGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACTTGCCGCCCAT > NC_002947/3377661‑3377959 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |