| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,583,420 | T→A | 9.4% | intergenic (+105/‑219) | PP_3158 → / → PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,583,420 | 0 | T | A | 9.4% | 638.1 / 27.2 | 246 | intergenic (+105/‑219) | PP_3158/PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (104/112); new base A (20/7); total (127/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.37e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 253 total aligned reads displayed.
TACGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGT > NC_002947/3583271‑3583569 | tACGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGCAt > 2:3500948/1‑150 (MQ=255) aCGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAtt > 2:1290233/1‑150 (MQ=255) cgcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAttttt < 2:1898405/150‑1 (MQ=255) gcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTg > 2:5481983/1‑150 (MQ=255) cAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGc < 1:4499300/150‑1 (MQ=255) gagCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCa < 2:4128904/150‑1 (MQ=255) ccTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAAAAATGCCAGtt < 1:4226519/150‑1 (MQ=255) ttGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAg < 2:4601707/150‑1 (MQ=255) ttGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAg < 2:2073930/150‑1 (MQ=255) tGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGc < 2:2311441/150‑1 (MQ=255) tgatgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGTTGAGTGTTCATGAGCGAATCAACGTTTCTTCGGGGTGCAACTTGGGTTTTTTCGAGTTGCAgggtg > 2:4118105/1‑146 (MQ=255) tgatgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAg < 1:1350734/150‑1 (MQ=255) tgatgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCCTTTTTGCCAGTTGCAGCGAg > 1:213765/1‑150 (MQ=255) tgatgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCGGCAAAAGGCATTTTTGCCAGTTGCAGCGAg > 1:1214365/1‑150 (MQ=255) gatgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTTCCACTTGCAGCGAgt > 2:5186255/1‑150 (MQ=255) atgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCAGTTGCAGCGAgtg > 1:5143736/1‑150 (MQ=255) gaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAATTTTGCCAGTTGCAGCGAGTGTa > 2:4386390/1‑150 (MQ=255) cTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAAGGGCATTTTTTCCACTTGAAACGAGGGTAtta > 1:163662/1‑148 (MQ=255) ttCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTTCCAGTTGCAGCGAGTGTAttaa > 2:1162436/1‑147 (MQ=255) ttCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGAc > 2:3730968/1‑150 (MQ=255) ttCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACATGCATTTTTGCCAGTTGCAGCGAGTGTATGAc > 1:2871706/1‑150 (MQ=255) tCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGCATTTTTGGCAGTTTCACCGAGGGTAttaaa > 1:3063824/1‑146 (MQ=255) cTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGc > 2:2212327/1‑150 (MQ=255) tGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGcc > 2:5571277/1‑150 (MQ=255) tGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGcc > 2:2723249/1‑150 (MQ=255) ccGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATTACAGccga > 2:3013564/1‑148 (MQ=255) ccGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTa < 2:1348021/150‑1 (MQ=255) ccGGTGCAGTAAGAGGCATCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGc < 1:4408753/123‑1 (MQ=255) cGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACCTGAATTTGGATTGAGTTGATGAGTGTTCATGAGCGAAACAACGTTTCGTCGGGCTGAAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAg < 1:1029222/150‑1 (MQ=255) ggTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCGGCAACTGGCATTTTTGCCAGTTGCAGCGGGTGGATGACAGCCgaga > 2:751689/1‑150 (MQ=255) ttGCAGTAAGAGGCCTCTGCCGCACTCCCTTTGCGAAATGCAATTAAATTATTGTGTTTTTAGTTGTTTTTTTTTATTTAGCTAATCAACTTTTCTTCGGGCTGCAAGTGTAATTTTTGCAATTTGCAGCTAGTGTATGACAGCCTAGaa < 2:529641/149‑1 (MQ=255) gTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGaa < 1:896701/150‑1 (MQ=255) gCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGATTGAGGATTGAGTTGATGTGTGTTCATGAGCGAATCAAGTTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAAtt < 1:2589422/150‑1 (MQ=255) cAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGGCAGTTGCAGCGAGTGTATTACAGCCGAGAATTc > 2:3368013/1‑150 (MQ=255) aGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAAATCa > 2:4447666/1‑150 (MQ=255) gTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGTTGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAGTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCaa < 2:2966099/150‑1 (MQ=255) gTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCaa < 2:4133634/150‑1 (MQ=255) gagGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAATTTTGCCAGTTTCAGCGAGTGTATTACAGCCGAGAATTAAAGGGa > 1:5096234/1‑150 (MQ=255) tctGCCGCACGCCCTTTGCGAATTGCCAATACATTAATGAGTATTGAGTTGATGAGTGTTAATGAGCGAATCAACGTTTCGTCGGGCTGAAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGgt < 2:1555141/150‑1 (MQ=255) tctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCAGAAAAAGGCATATTTGCCAATTGCATCGAGTGTTTTACAGACAAGAAATAAAAGGAAATgtt > 1:3713837/1‑148 (MQ=255) ctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTAATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGgtg < 2:2844977/150‑1 (MQ=255) gCCGCACGCCCTTTGCGAAATGCCCATACATTAATGAGGATTGAGTTGATGAGTTTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGAATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGtt < 2:1756498/150‑1 (MQ=255) gCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGGATTTTTTGCCGGTGCAGCGCGTGTATGACAGCCGAGAATTAAAGGGGAAAGGGGtt > 1:3829497/1‑150 (MQ=255) ccGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGTTTTAGTTTATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGAATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGttn < 1:3521612/150‑2 (MQ=255) cGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGGTGCAACTTGGATTTTTTGCAGTTTCAGCGAGTTTATGTCAGCCTAGAATTAAAGGGAAATTGTGttgt > 1:1313951/1‑148 (MQ=255) ccTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCGACTGGGATTTTTGCCAGTTGCCGCGAGGGTATGACCGCCTAGAATTCAAGGGACATGGTGTTCTCTAAGGt > 2:2606099/1‑150 (MQ=255) tttGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCa < 1:5002005/150‑1 (MQ=255) tttGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAATTTTGCCAGTTTCAGCGAGTGTATGACAGCCGAGAATTAAAGGGAAAAGGTGTTATCTAAGGTCa > 2:2113037/1‑150 (MQ=255) tttGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACATGCATTTTTGCCAGTTGCAGCGAGTGTATGAAAGCCTAGAATTAAAGGGAAAATGTGTTCTCTAAGGTCa > 1:2253836/1‑150 (MQ=255) ttGCTAATTGCCCATACATGATTGCGTTTTGTTTTGATGAGTGTTCATGAGCTAATAAACGTTTCGTGGGGCTGCAACTGGAATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCAt < 1:4243441/150‑1 (MQ=255) ttGCGAAATGCCCATACATGATTGAGGATTTAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCAt < 2:5316308/150‑1 (MQ=255) ttGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACTTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCAt < 2:1010580/150‑1 (MQ=255) ttGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCAt < 1:4593586/150‑1 (MQ=255) aaaTGCCCATACATGAATCAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGACGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATc < 2:3369385/150‑1 (MQ=255) aaTGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGGAACTGGCATTTTTGGCAGTTGCAGCGTGTGTATGAGGGCCTAGAATTGAAGGGAAATGGTGTTGTGTTAGGTGATTTATCg > 2:2745319/1‑150 (MQ=255) aTGCCCATACATGATTGAGGTTTGAGTTGAGGAGTGTTCATGAGCGAATCAAGGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGt < 1:1007070/150‑1 (MQ=255) aTGCCCATACATGAATGAGGTTTGAGTTGATGTGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGt < 1:663860/150‑1 (MQ=255) ggCCCATCCCTGATTGTGGTTTGCGTTGATGTGTGTTCATGAGCGAATCACCGTTTCGTGGGGCTGCAAGTGGCATTTTGGCCTGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTg < 1:483520/149‑1 (MQ=255) gCCCATACATGATTGAGGATTGTGTTGATGAGTGTTCATGCGCGAATCAACGTTTCGTCGGGCTGCAACTGGAATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGa < 1:3368013/150‑1 (MQ=255) cccATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTTCAGCGAGTGTATGACAGCCAAGAAATAAAGGGAAAAGGTGTTCTCTAAGGTAAATAATCGTGaa > 2:1087659/1‑150 (MQ=255) atgaatgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATTACAGCCTAGAATTAAAGGGAAATGGTGTTCTCTAAGGTCATTAATAGTGAAAAGttag > 2:3110074/1‑148 (MQ=255) atgaatgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCg < 2:383308/150‑1 (MQ=255) atgaatgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCAGTTGCAGCCAGTGTATGACAGCCGAGAATTAAAGGGAAATGGTTTTATCTAATGTCATAAATCGTGAAACGTTCg > 2:2470007/1‑150 (MQ=255) aatgtGGTTTGATTTGATGTGTTTTCTTGAGCGAATAAAGGTTTCGTCGGGCTGAAACTGTATTTTTTGCCTGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCaa < 1:1449883/150‑1 (MQ=255) aatgaGTATTGAGTTGATGACAGTTCATGAGCTAATCAACGTTTCGTCGGGCTGCAACTGCCAATTTTCCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCaa < 1:4118105/150‑1 (MQ=255) tgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGTGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGc < 1:1914563/150‑1 (MQ=255) gATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCAGTTGCAGCGAGTGTATTACAGCCGAGAAATCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACCTTCGCAAGCGTac > 1:470489/1‑150 (MQ=255) gATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTGCACCGAGTTTATGACAGCCTAGAAATCAAGGGAAATTGTGTTATCTAAGGTAAATAATAGTGTAACCTTAGCAAGGGtta > 2:3431472/1‑148 (MQ=255) tGAGTTTATGAGTTTTCATGAGCGAATCAACGTTTCGGCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACATCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACg < 1:3390054/150‑1 (MQ=255) atgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGTCTTTTTTGCCATTTGAAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACg < 1:589259/150‑1 (MQ=255) tgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACATGCATTTTTTCCAGTTTCATCGAGTGTATTACAGCCTAGAATTAAAGGGAAATGGTGTTCTATAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACgg > 2:4919479/1‑150 (MQ=255) gaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGgc < 1:1283248/150‑1 (MQ=255) gaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGgc < 1:1283293/150‑1 (MQ=255) ttCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCCGTTTTGCCAGTTGCAGCGAGTGTATGACAGCCGAGAAGTAAAGGGCAATGGTGTTCTCTAAGGTCATTAAACCTGAAACGTTCGCAAGCGTACACCCCCAACGgcgcgag > 2:3301612/1‑147 (MQ=255) cATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCTGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTAttt < 2:4809247/150‑1 (MQ=255) cATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTAttt < 1:5543856/150‑1 (MQ=255) aTGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTg < 2:5025764/150‑1 (MQ=255) gAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTggg < 2:2303308/150‑1 (MQ=255) gAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTggg < 1:2757049/150‑1 (MQ=255) gAGCGAATCAACGTTTCGTCGGGCTGCAACTGGAATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTggg < 1:3110074/150‑1 (MQ=255) aTCAACGTTTCGTCGGGCTTCAACAGGCATTTTTTCCAGTTGCAGCGAGTTTATGAAAGCCGAGAATTAAAGGGAAATGGTGTTCTATAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTAAGGCGCGAATTGGGGTGATg > 2:2204381/1‑150 (MQ=255) aTCAACGTTTCGTCGGGCTGCAACATGCATTTTTTCCAGTTGCAGCGAGTGTATTACAGCCAAGAATTAAAGGGAAAAGGTGTTCTGTAAGGTCATTAATAGTGAAACCTTAGCAAGCGTACACGCCCAACGGCGCTATTTGGGGTGATg > 1:2288081/1‑150 (MQ=255) aaCGTTTCGTCGGGCTGCAAAAGGCAATTTTTCCAGTTTCAGCGAGTGTAATAAAGCCAAGAAATCAAGGGAAAATGTGTTATAAAAGGTCAATAAACCTGAAAACTTAGCAAGCCTACACCCCCAACGGCGCGAGTTGGGGGGATGGcc > 2:1638571/1‑150 (MQ=255) acttttCGTCGGGCTGCAACGGGAATTTTTGCAAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCa < 1:5374739/147‑1 (MQ=255) cttttCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCAt < 2:1502615/148‑1 (MQ=255) cGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCAt < 1:2183992/150‑1 (MQ=255) gTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCAtt < 1:1153986/150‑1 (MQ=255) gCTGCAACTGGCAAAAATGCCAGTCGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGtt > 2:846184/1‑150 (MQ=255) cTGCAACTGGCAAAAATGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTg > 2:3458260/1‑150 (MQ=255) tGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTAGTTGGGGTGATGGCCATTGCTCCGTGTTGa > 1:2833116/1‑150 (MQ=255) gCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGaa < 2:4851839/150‑1 (MQ=255) cAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTAGTTGGGGTGATGGCCAATGCTCCGTGTTGAAg > 1:3567755/1‑150 (MQ=255) accTGGCATATTTGCCAGTTGCAGCGAGTGGATGACAGCCGAGAATTCACGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGt < 2:213765/148‑1 (MQ=255) tGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACa > 2:4771639/1‑150 (MQ=255) ggCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACaa > 1:2919573/1‑150 (MQ=255) gCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGTAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAAt > 2:1945197/1‑150 (MQ=255) cATTTTTGCCTGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATg < 1:1945538/150‑1 (MQ=255) aTTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATgg > 1:2387548/1‑150 (MQ=255) aTTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATgg > 1:2608231/1‑150 (MQ=255) aTTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATgg > 2:825878/1‑150 (MQ=255) | TACGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGT > NC_002947/3583271‑3583569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |